MirGeneDB ID | Pma-Mir-153-o3 |
Family name |
MIR-153 (all species) |
Seed |
UGCAUAG |
Species |
Sea Lamprey (Petromyzon marinus) |
MiRBase ID |
pma-mir-153-3
|
Paralogues |
Pma-Mir-153-o1
Pma-Mir-153-o2
|
Orthologues |
Asu-Mir-153
Bfl-Mir-153
Bla-Mir-153
Bpl-Mir-153
Cgi-Mir-153
Cin-Mir-153
Cte-Mir-153
Dma-Mir-153
Dpu-Mir-153
Isc-Mir-153
Lan-Mir-153
Lgi-Mir-153
Npo-Mir-153
Obi-Mir-153
Ovu-Mir-153
Pfl-Mir-153
Pmi-Mir-153
Sko-Mir-153
Sme-Mir-153
Spu-Mir-153
Xbo-Mir-153
|
Node of Origin (locus) |
P. marinus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046102.1: 491761-491824 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAGCCGGCGCCGUGCGUGGCUGUGGCCGAUAUCAUUUUUGUGACCUGCAGCUUGUACCCUCGCCGCCCAGUUGCAUAGUCACAAAAGUGAUCAUCGGAGGCAGCCGCCCUCCGCACACCUACAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAGCCGGCGCCGUGCGU-- GG - C-| UGUACCC
GGCUGU CCGAU AUCAUUUUUGUGAC UGCAGCU U
CCGACG GGCUA UAGUGAAAACACUG ACGUUGA C
GACAUCCACACGCCUCCCG GA C AU^ CCCGCCG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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Star sequence |
Pma-Mir-153-o3_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AUCAUUUUUGUGACCUGCAGCU -22
Get sequence
|
Mature sequence |
Pma-Mir-153-o3_3p |
mirBase accession | MIMAT0019484 |
Sequence |
40- UUGCAUAGUCACAAAAGUGAUCAU -64
Get sequence
|