MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-153-o1

Family name MIR-153 (all species)
Seed UGCAUAG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-153-1
Paralogues Pma-Mir-153-o2  Pma-Mir-153-o3 
Orthologues Aca-Mir-153-P1  Ami-Mir-153-P1  Asu-Mir-153  Bfl-Mir-153  Bla-Mir-153  Bpl-Mir-153  Bta-Mir-153-P1  Cfa-Mir-153-P1  Cgi-Mir-153  Cin-Mir-153  Cli-Mir-153-P1  Cmi-Mir-153-P1  Cpi-Mir-153-P1  Cpo-Mir-153-P1  Cte-Mir-153  Dma-Mir-153  Dno-Mir-153-P1  Dpu-Mir-153  Dre-Mir-153-P1a  Ete-Mir-153-P1  Gga-Mir-153-P1  Gja-Mir-153-P1  Gmo-Mir-153-P1a  Gmo-Mir-153-P1b  Hsa-Mir-153-P1  Isc-Mir-153  Lan-Mir-153  Lch-Mir-153-P1  Lgi-Mir-153  Loc-Mir-153-P1  Mal-Mir-153-P1a  Mal-Mir-153-P1b  Mdo-Mir-153-P1  Mml-Mir-153-P1  Mmu-Mir-153-P1  Mun-Mir-153-P1  Npo-Mir-153  Oan-Mir-153-P1  Obi-Mir-153  Ocu-Mir-153-P1  Ovu-Mir-153  Pbv-Mir-153-P1  Pfl-Mir-153  Pmi-Mir-153  Rno-Mir-153-P1  Sha-Mir-153-P1  Sko-Mir-153  Sme-Mir-153  Spt-Mir-153-P1  Spu-Mir-153  Sto-Mir-153-P1  Tgu-Mir-153-P1  Tni-Mir-153-P1b  Xbo-Mir-153  Xla-Mir-153-P1c  Xla-Mir-153-P1d  Xtr-Mir-153-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046072.1: 547240-547301 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGCGCACCCCGCUUCCCCGGCAGCCGAUGUCAUUUUUGUGAUUUGCAGCUGGUUUCAUUAGUAAAGUUGCAUAGUCACAAAAGUGAUCAUUGGAAGCUGUGGACCCUCCUCGGCCCGGCC
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Structure
        10          20        30         40         50         
GCUGCGCACCCCGCUUC-  -    AG      -              -|      GGUUUC 
                  CC CGGC  CCGAUG UCAUUUUUGUGAUU UGCAGCU      A
                  GG GUCG  GGUUAC AGUGAAAACACUGA ACGUUGA      U
CCGGCCCGGCUCCUCCCA  U    AA      U              U^      AAUGAU 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-153-o1_5p*

mirBase accessionMIMAT0019483
Sequence
0- GUCAUUUUUGUGAUUUGCAGCU -22
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Mature sequence

Pma-Mir-153-o1_3p

mirBase accessionMIMAT0019484
Sequence
38- UUGCAUAGUCACAAAAGUGAUCAU -62
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