MirGeneDB ID | Spt-Mir-153-P1 |
---|---|
Family name | MIR-153 (all species) |
Seed | UGCAUAG |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-153-P2 |
Orthologues | Aca-Mir-153-P1 Ami-Mir-153-P1 Asu-Mir-153 Bfl-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P1 Cfa-Mir-153-P1 Cgi-Mir-153 Cin-Mir-153 Cli-Mir-153-P1 Cmi-Mir-153-P1 Cpi-Mir-153-P1 Cpo-Mir-153-P1 Cte-Mir-153 Dma-Mir-153 Dno-Mir-153-P1 Dpu-Mir-153 Dre-Mir-153-P1a Ete-Mir-153-P1 Gga-Mir-153-P1 Gja-Mir-153-P1 Gmo-Mir-153-P1a Gmo-Mir-153-P1b Hsa-Mir-153-P1 Isc-Mir-153 Lan-Mir-153 Lch-Mir-153-P1 Lgi-Mir-153 Loc-Mir-153-P1 Mal-Mir-153-P1a Mal-Mir-153-P1b Mdo-Mir-153-P1 Mml-Mir-153-P1 Mmu-Mir-153-P1 Mun-Mir-153-P1 Npo-Mir-153 Oan-Mir-153-P1 Obi-Mir-153 Ocu-Mir-153-P1 Ovu-Mir-153 Pbv-Mir-153-P1 Pfl-Mir-153 Pma-Mir-153-o1 Pmi-Mir-153 Rno-Mir-153-P1 Sha-Mir-153-P1 Sko-Mir-153 Sme-Mir-153 Spu-Mir-153 Sto-Mir-153-P1 Tgu-Mir-153-P1 Tni-Mir-153-P1b Xbo-Mir-153 Xla-Mir-153-P1c Xla-Mir-153-P1d Xtr-Mir-153-P1 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01002394.1: 550573-550633 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UAUUUUGCCAGCUAAUUAGCGGUUGCCAGUGUCAUUUUUGUGAUGUUGCAGCUAGUAAUAUGAGCCCAGUUGCAUAGUCACAAAAGUGAUCAUUGGAAACUGUGACUCUGCUGCAGGGACAGet precursor sequence |
Structure | 10 20 30 40 50 60 UAUUUUGCCAGCUAAUUA G -| GU AGUAAU GCGGUU CCAGUG UCAUUUUUGUGAU UGCAGCU A UGUCAA GGUUAC AGUGAAAACACUG ACGUUGA U ACAGGGACGUCGUCUCAG A U^ AU CCCGAG . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Spt-Mir-153-P1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GUCAUUUUUGUGAUGUUGCAGCU -23
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|
Mature sequence | Spt-Mir-153-P1_3p (predicted) |
mirBase accession | None |
Sequence |
39- UUGCAUAGUCACAAAAGUGAUC -61
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|