MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-153-P1

Family name MIR-153 (all species)
Seed UGCAUAG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-153
Paralogues
Orthologues Aca-Mir-153-P1  Ami-Mir-153-P1  Asu-Mir-153  Bfl-Mir-153  Bla-Mir-153  Bpl-Mir-153  Bta-Mir-153-P1  Cfa-Mir-153-P1  Cgi-Mir-153  Cin-Mir-153  Cli-Mir-153-P1  Cmi-Mir-153-P1  Cpi-Mir-153-P1  Cpo-Mir-153-P1  Cte-Mir-153  Dma-Mir-153  Dno-Mir-153-P1  Dpu-Mir-153  Dre-Mir-153-P1a  Ete-Mir-153-P1  Gga-Mir-153-P1  Gja-Mir-153-P1  Gmo-Mir-153-P1a  Gmo-Mir-153-P1b  Hsa-Mir-153-P1  Isc-Mir-153  Lan-Mir-153  Lch-Mir-153-P1  Lgi-Mir-153  Loc-Mir-153-P1  Mal-Mir-153-P1a  Mal-Mir-153-P1b  Mdo-Mir-153-P1  Mml-Mir-153-P1  Mmu-Mir-153-P1  Mun-Mir-153-P1  Npo-Mir-153  Oan-Mir-153-P1  Obi-Mir-153  Ocu-Mir-153-P1  Ovu-Mir-153  Pbv-Mir-153-P1  Pfl-Mir-153  Pma-Mir-153-o1  Pmi-Mir-153  Sha-Mir-153-P1  Sko-Mir-153  Sme-Mir-153  Spt-Mir-153-P1  Spu-Mir-153  Sto-Mir-153-P1  Tgu-Mir-153-P1  Tni-Mir-153-P1b  Xbo-Mir-153  Xla-Mir-153-P1c  Xla-Mir-153-P1d  Xtr-Mir-153-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)
chr6: 145105077-145105137 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACUUUGCCAGCUACUUAGCGGUGGCCAGUGUCAUUUUUGUGAUGUUGCAGCUAGUAAUAUGAGCCCAGUUGCAUAGUCACAAAAGUGAUCAUUGGAAACUGUGACUGCAGCAGGGACAUG
Get precursor sequence
Structure
        10        20        30         40        50        60
UACUUUGCCAGCUACUUA     GG      -|            GU       AGUAAU 
                  GCGGU  CCAGUG UCAUUUUUGUGAU  UGCAGCU      A
                  UGUCA  GGUUAC AGUGAAAACACUG  ACGUUGA      U
GUACAGGGACGACGUCAG     AA      U^            AU       CCCGAG 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-153-P1_5p*

mirBase accessionMIMAT0017135
Sequence
0- GUCAUUUUUGUGAUGUUGCAGCU -23
Get sequence
Proposed targets TargetScanVert: rno-miR-153-5p
miRDB: MIMAT0017135
Mature sequence

Rno-Mir-153-P1_3p

mirBase accessionMIMAT0000855
Sequence
39- UUGCAUAGUCACAAAAGUGAUC -61
Get sequence
Proposed targets microrna.org: MIMAT0000855
TargetScanVert: rno-miR-153-3p
miRDB: MIMAT0000855