Mir-153-P1a

MirGeneDB ID

Dre-Mir-153-P1a

Family name

MIR-153 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-153a

Paralogues

Dre-Mir-153-P2a Dre-Mir-153-P2b

Orthologues

Aca-Mir-153-P1 Agr-Mir-153 Ami-Mir-153-P1 Asu-Mir-153 Bfl-Mir-153 Bko-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P1 Cfa-Mir-153-P1 Cin-Mir-153 Cja-Mir-153-P1 Cli-Mir-153-P1 Cmi-Mir-153-P1 Cpi-Mir-153-P1 Cpo-Mir-153-P1 Cte-Mir-153 Dgr-Mir-153 Dma-Mir-153 Dno-Mir-153-P1 Dpu-Mir-153 Eba-Mir-153 Eca-Mir-153-P1 Egr-Mir-153 Ete-Mir-153-P1 Gga-Mir-153-P1 Gja-Mir-153-P1 Gmo-Mir-153-P1a Gsa-Mir-153 Gsp-Mir-153 Hmi-Mir-153 Hru-Mir-153 Hsa-Mir-153-P1 Isc-Mir-153 Laf-Mir-153-P1 Lan-Mir-153 Lch-Mir-153-P1 Lgi-Mir-153 Llo-Mir-153 Loc-Mir-153-P1 Mal-Mir-153-P1a Mdo-Mir-153-P1 Mgi-Mir-153 Mml-Mir-153-P1 Mmr-Mir-153-P1 Mmu-Mir-153-P1 Mom-Mir-153 Mun-Mir-153-P1 Npo-Mir-153 Oan-Mir-153-P1 Obi-Mir-153 Ocu-Mir-153-P1 Ofu-Mir-153 Ovu-Mir-153 Pab-Mir-153-P1 Pau-Mir-153 Pbv-Mir-153-P1 Pca-Mir-153 Pcr-Mir-153 Pdu-Mir-153 Pfl-Mir-153 Pma-Mir-153-o1 Pmi-Mir-153 Pve-Mir-153 Rno-Mir-153-P1 Rph-Mir-153 Sha-Mir-153-P1 Sko-Mir-153 Sme-Mir-153 Snu-Mir-153 Spt-Mir-153-P1 Spu-Mir-153 Sto-Mir-153-P1 Tgu-Mir-153-P1 Tur-Mir-153 War-Mir-153 Xbo-Mir-153 Xtr-Mir-153-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr7: 40485520-40485580 [+] UCSC Ensembl

Seed

UGCAUAG

Precursor
(pre-Mir +30nt flank)

CCGUUGGCCAGCUAAUUAGCGGUUGCCAGUGUCAUUUUUGUGAUGUUGCAGCUAGUUAUAUGAGCCCAGUUGCAUAGUCACAAAAGUGAUCAUUGGAAACUGUAUCUCCUCUUCCAGGCCC

Get precursor sequence

Structure

        10        20        30         40        50        60
CCGUUGGCCAGCUAAUUA      G      -|            GU       AGUUAU 
                  GCGGUU CCAGUG UCAUUUUUGUGAU  UGCAGCU      A
                  UGUCAA GGUUAC AGUGAAAACACUG  ACGUUGA      U
CCCGGACCUUCUCCUCUA      A      U^            AU       CCCGAG 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-153-P1a_5p*

mirBase accession

MIMAT0031978

Sequence

0- GUCAUUUUUGUGAUGUUGCAGCU -23

Get sequence

Mature sequence

Dre-Mir-153-P1a_3p

mirBase accession

MIMAT0001849

Sequence

39- UUGCAUAGUCACAAAAGUGAUC -61

Get sequence

Proposed targets

TargetScanFish: dre-miR-153a