MirGeneDB ID | Dre-Mir-153-P2a |
Family name |
MIR-153 (all species) |
Seed |
UGCAUAG |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-153c
|
Paralogues |
Dre-Mir-153-P1a
Dre-Mir-153-P2b
|
Orthologues |
Aca-Mir-153-P2
Ami-Mir-153-P2
Asu-Mir-153
Bfl-Mir-153
Bla-Mir-153
Bpl-Mir-153
Bta-Mir-153-P2
Cfa-Mir-153-P2
Cgi-Mir-153
Cin-Mir-153
Cli-Mir-153-P2
Cmi-Mir-153-P2
Cpi-Mir-153-P2
Cte-Mir-153
Dma-Mir-153
Dno-Mir-153-P2
Dpu-Mir-153
Gga-Mir-153-P2
Gja-Mir-153-P2
Gmo-Mir-153-P2a
Hsa-Mir-153-P2
Isc-Mir-153
Lan-Mir-153
Lch-Mir-153-P2
Lgi-Mir-153
Loc-Mir-153-P2
Mal-Mir-153-P2a
Mdo-Mir-153-P2
Mml-Mir-153-P2
Mun-Mir-153-P2
Npo-Mir-153
Oan-Mir-153-P2
Obi-Mir-153
Ovu-Mir-153
Pbv-Mir-153-P2
Pfl-Mir-153
Pma-Mir-153-o2
Pmi-Mir-153
Sha-Mir-153-P2
Sko-Mir-153
Sme-Mir-153
Spt-Mir-153-P2
Spu-Mir-153
Sto-Mir-153-P2
Tgu-Mir-153-P2
Tni-Mir-153-P2a
Xbo-Mir-153
Xtr-Mir-153-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (danRer11) |
chr9: 7612418-7612477 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAGGUCCCUGGACGUAGCACACCUCCCAGUGUCAUUUUUGUGAUUUGCAGCUAGUAGUCUGGGUCCAGUUGCAUAGUCACAAAAAUGAUCAUUGGUAGGUGUGAGUGCAGCAGGAGUGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAGGUCCCUGGACGUAGC C - -| AGUAGU
ACACCU CCAGUG UCAUUUUUGUGAUU UGCAGCU C
UGUGGA GGUUAC AGUAAAAACACUGA ACGUUGA U
GAGUGAGGACGACGUGAG U U U^ CCUGGG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Star sequence |
Dre-Mir-153-P2a_5p* |
mirBase accession | MIMAT0031979 |
Sequence |
0- GUCAUUUUUGUGAUUUGCAGCU -22
Get sequence
|
Mature sequence |
Dre-Mir-153-P2a_3p |
mirBase accession | MIMAT0001850 |
Sequence |
38- UUGCAUAGUCACAAAAAUGAUC -60
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-153c
|