Mir-153-P2

MirGeneDB ID

Loc-Mir-153-P2

Family name

MIR-153 (all species)

Seed

UGCAUAG

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-153-P1

Orthologues

Aca-Mir-153-P2 Ami-Mir-153-P2 Asu-Mir-153 Bfl-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P2 Cfa-Mir-153-P2 Cgi-Mir-153 Cin-Mir-153 Cli-Mir-153-P2 Cmi-Mir-153-P2 Cpi-Mir-153-P2 Cte-Mir-153 Dma-Mir-153 Dno-Mir-153-P2 Dpu-Mir-153 Dre-Mir-153-P2a Dre-Mir-153-P2b Gga-Mir-153-P2 Gja-Mir-153-P2 Gmo-Mir-153-P2a Hsa-Mir-153-P2 Isc-Mir-153 Lan-Mir-153 Lch-Mir-153-P2 Lgi-Mir-153 Mal-Mir-153-P2a Mal-Mir-153-P2b Mdo-Mir-153-P2 Mml-Mir-153-P2 Mun-Mir-153-P2 Npo-Mir-153 Oan-Mir-153-P2 Obi-Mir-153 Ovu-Mir-153 Pbv-Mir-153-P2 Pfl-Mir-153 Pma-Mir-153-o2 Pmi-Mir-153 Sha-Mir-153-P2 Sko-Mir-153 Sme-Mir-153 Spt-Mir-153-P2 Spu-Mir-153 Sto-Mir-153-P2 Tgu-Mir-153-P2 Tni-Mir-153-P2a Tni-Mir-153-P2b Xbo-Mir-153 Xla-Mir-153-P2c Xla-Mir-153-P2d Xtr-Mir-153-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG12: 30822159-30822218 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CUGGGCACCGUCGGAUGCACAGCUGCCUGUGUCAUUUUUGUGAUUUGCAGCUAGUAGUCUGAGUCCAGUUGCAUAGUCACAAAAGUGAUCAUUGGCAGCUGUGGCUGCUGCAUGGAGCAC

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Structure

        10        20        30         40         50         
CUGGGCACCGUCGGAUGC         U   -              -|      AGUAGU 
                  ACAGCUGCC GUG UCAUUUUUGUGAUU UGCAGCU      C
                  UGUCGACGG UAC AGUGAAAACACUGA ACGUUGA      U
CACGAGGUACGUCGUCGG         U   U              U^      CCUGAG 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-153-P2_5p*

mirBase accession

None

Sequence

0- GUCAUUUUUGUGAUUUGCAGCU -22

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Mature sequence

Loc-Mir-153-P2_3p

mirBase accession

None

Sequence

38- UUGCAUAGUCACAAAAGUGAUC -60

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