Mir-153-P2

MirGeneDB ID

Gga-Mir-153-P2

Family name

MIR-153 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

Paralogues

Gga-Mir-153-P1

Orthologues

Aca-Mir-153-P2 Agr-Mir-153 Ami-Mir-153-P2 Asu-Mir-153 Bfl-Mir-153 Bko-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P2 Cfa-Mir-153-P2 Cin-Mir-153 Cja-Mir-153-P2 Cli-Mir-153-P2 Cmi-Mir-153-P2 Cpi-Mir-153-P2 Cte-Mir-153 Dgr-Mir-153 Dma-Mir-153 Dno-Mir-153-P2 Dpu-Mir-153 Dre-Mir-153-P2a Dre-Mir-153-P2b Eba-Mir-153 Eca-Mir-153-P2 Egr-Mir-153 Gja-Mir-153-P2 Gmo-Mir-153-P2a Gsa-Mir-153 Gsp-Mir-153 Hmi-Mir-153 Hru-Mir-153 Hsa-Mir-153-P2 Isc-Mir-153 Laf-Mir-153-P2 Lan-Mir-153 Lch-Mir-153-P2 Lgi-Mir-153 Llo-Mir-153 Loc-Mir-153-P2 Mal-Mir-153-P2a Mal-Mir-153-P2b Mdo-Mir-153-P2 Mgi-Mir-153 Mml-Mir-153-P2 Mmr-Mir-153-P2 Mom-Mir-153 Mun-Mir-153-P2 Neu-Mir-153-P2 Npo-Mir-153 Oan-Mir-153-P2 Obi-Mir-153 Ofu-Mir-153 Ovu-Mir-153 Pab-Mir-153-P2 Pau-Mir-153 Pbv-Mir-153-P2 Pca-Mir-153 Pcr-Mir-153 Pdu-Mir-153 Pfl-Mir-153 Pma-Mir-153-o2 Pmi-Mir-153 Pve-Mir-153 Rph-Mir-153 Sha-Mir-153-P2 Sko-Mir-153 Sme-Mir-153 Snu-Mir-153 Spt-Mir-153-P2 Spu-Mir-153 Sto-Mir-153-P2 Tgu-Mir-153-P2 Tni-Mir-153-P2a Tni-Mir-153-P2b Tur-Mir-153 War-Mir-153 Xbo-Mir-153 Xla-Mir-153-P2c Xla-Mir-153-P2d Xtr-Mir-153-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

7: 22192593-22192651 [+] UCSC Ensembl

Seed

UGCAUAG

Precursor
(pre-Mir +30nt flank)

GUCUCUGUCCCCGUCUCGCAGCUGCCGGCGUCAUUUUUGUGAUUUGCAGCUAGUAAUCUGGCUCCAGUUGCAUAGUCACAAAAGUGAUCGUUGGCAGCCGUGCCUGCCGCACGGAGCGU

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Structure

        10         20        30         40         50        
GUCUCUGUCCCCGUCUC-  A          -              -|      AGUAAU 
                  GC GCUGCCGGCG UCAUUUUUGUGAUU UGCAGCU      C
                  UG CGACGGUUGC AGUGAAAACACUGA ACGUUGA      U
UGCGAGGCACGCCGUCCG  C          U              U^      CCUCGG 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-153-P2_5p*

mirBase accession

None

Sequence

0- UCAUUUUUGUGAUUUGCAGCU -21

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Mature sequence

Gga-Mir-153-P2_3p

mirBase accession

None

Sequence

37- UUGCAUAGUCACAAAAGUGAUC -59

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