Mir-153-o2

MirGeneDB ID

Pma-Mir-153-o2

Family name

MIR-153 (all species)

Seed

UGCAUAG

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-153-2

Paralogues

Pma-Mir-153-o1 Pma-Mir-153-o3

Orthologues

Aca-Mir-153-P2 Ami-Mir-153-P2 Asu-Mir-153 Bfl-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P2 Cfa-Mir-153-P2 Cgi-Mir-153 Cin-Mir-153 Cli-Mir-153-P2 Cmi-Mir-153-P2 Cpi-Mir-153-P2 Cte-Mir-153 Dma-Mir-153 Dno-Mir-153-P2 Dpu-Mir-153 Dre-Mir-153-P2a Dre-Mir-153-P2b Gga-Mir-153-P2 Gja-Mir-153-P2 Gmo-Mir-153-P2a Hsa-Mir-153-P2 Isc-Mir-153 Lan-Mir-153 Lch-Mir-153-P2 Lgi-Mir-153 Loc-Mir-153-P2 Mal-Mir-153-P2a Mal-Mir-153-P2b Mdo-Mir-153-P2 Mml-Mir-153-P2 Mun-Mir-153-P2 Npo-Mir-153 Oan-Mir-153-P2 Obi-Mir-153 Ovu-Mir-153 Pbv-Mir-153-P2 Pfl-Mir-153 Pmi-Mir-153 Sha-Mir-153-P2 Sko-Mir-153 Sme-Mir-153 Spt-Mir-153-P2 Spu-Mir-153 Sto-Mir-153-P2 Tgu-Mir-153-P2 Tni-Mir-153-P2a Tni-Mir-153-P2b Xbo-Mir-153 Xla-Mir-153-P2c Xla-Mir-153-P2d Xtr-Mir-153-P2

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046087.1: 10331164-10331225 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACGACGCCUGCAAACGUGCCGGCGGCUGAUGUCAUUUUUGUGAUUUGCAACUCGUUUUACGUGUGAAGUUGCAUAGUCACAAAAGUGAUCAUCAGAGGCCUGGGGCCCUGCCAGCAAAGCAU

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Structure

        10         20         30         40         50         
ACGACGCCUGCAAACGUG-  -   GG      -              -|      CGUUUU 
                   CC GGC  CUGAUG UCAUUUUUGUGAUU UGCAACU      A
                   GG CCG  GACUAC AGUGAAAACACUGA ACGUUGA      C
UACGAAACGACCGUCCCGG  U   GA      U              U^      AGUGUG 
120       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-153-o2_5p*

mirBase accession

None

Sequence

0- GUCAUUUUUGUGAUUUGCAACU -22

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Mature sequence

Pma-Mir-153-o2_3p

mirBase accession

MIMAT0019484

Sequence

38- UUGCAUAGUCACAAAAGUGAUCAU -62

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