MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-153-P1

Family name MIR-153 (all species)
Seed UGCAUAG
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-153
Paralogues Gga-Mir-153-P2 
Orthologues Aca-Mir-153-P1  Ami-Mir-153-P1  Asu-Mir-153  Bfl-Mir-153  Bla-Mir-153  Bpl-Mir-153  Bta-Mir-153-P1  Cfa-Mir-153-P1  Cgi-Mir-153  Cin-Mir-153  Cli-Mir-153-P1  Cmi-Mir-153-P1  Cpi-Mir-153-P1  Cpo-Mir-153-P1  Cte-Mir-153  Dma-Mir-153  Dno-Mir-153-P1  Dpu-Mir-153  Dre-Mir-153-P1a  Ete-Mir-153-P1  Gja-Mir-153-P1  Gmo-Mir-153-P1a  Gmo-Mir-153-P1b  Hsa-Mir-153-P1  Isc-Mir-153  Lan-Mir-153  Lch-Mir-153-P1  Lgi-Mir-153  Loc-Mir-153-P1  Mal-Mir-153-P1a  Mal-Mir-153-P1b  Mdo-Mir-153-P1  Mml-Mir-153-P1  Mmu-Mir-153-P1  Mun-Mir-153-P1  Npo-Mir-153  Oan-Mir-153-P1  Obi-Mir-153  Ocu-Mir-153-P1  Ovu-Mir-153  Pbv-Mir-153-P1  Pfl-Mir-153  Pma-Mir-153-o1  Pmi-Mir-153  Rno-Mir-153-P1  Sha-Mir-153-P1  Sko-Mir-153  Sme-Mir-153  Spt-Mir-153-P1  Spu-Mir-153  Sto-Mir-153-P1  Tgu-Mir-153-P1  Tni-Mir-153-P1b  Xbo-Mir-153  Xla-Mir-153-P1c  Xla-Mir-153-P1d  Xtr-Mir-153-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)
2: 8899858-8899918 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUUUGCCAGCUAAUUAGCGGUUGCCAGUGUCAUUUUUGUGAUGUUGCAGCUAGUAAUAUGAGCCCAGUUGCAUAGUCACAAAAGUGAUCAUUGGAAACUGUGACUCUGCUGCAGGGACA
Get precursor sequence
Structure
        10        20        30         40        50        60
UAUUUUGCCAGCUAAUUA      G      -|            GU       AGUAAU 
                  GCGGUU CCAGUG UCAUUUUUGUGAU  UGCAGCU      A
                  UGUCAA GGUUAC AGUGAAAACACUG  ACGUUGA      U
ACAGGGACGUCGUCUCAG      A      U^            AU       CCCGAG 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-153-P1_5p*

mirBase accessionMIMAT0026502
Sequence
0- GUCAUUUUUGUGAUGUUGCAGCU -23
Get sequence
Proposed targets TargetScanVert: gga-miR-153-5p
miRDB: MIMAT0026502
Mature sequence

Gga-Mir-153-P1_3p

mirBase accessionMIMAT0001119
Sequence
39- UUGCAUAGUCACAAAAGUGAUC -61
Get sequence
Proposed targets TargetScanVert: gga-miR-153-3p
miRDB: MIMAT0001119