Mir-153-P13

MirGeneDB ID

Lpo-Mir-153-P13

Family name

MIR-153 (all species)

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-153-P10 Lpo-Mir-153-P11 Lpo-Mir-153-P12 Lpo-Mir-153-P14 Lpo-Mir-153-P15

Orthologues

Agr-Mir-153 Asu-Mir-153 Bfl-Mir-153 Bko-Mir-153 Bla-Mir-153 Bpl-Mir-153 Cin-Mir-153 Cte-Mir-153 Dgr-Mir-153 Dma-Mir-153 Dpu-Mir-153 Eba-Mir-153 Egr-Mir-153 Gsa-Mir-153 Gsp-Mir-153 Hmi-Mir-153 Hru-Mir-153 Isc-Mir-153 Lan-Mir-153 Lgi-Mir-153 Llo-Mir-153 Mgi-Mir-153 Mom-Mir-153 Npo-Mir-153 Obi-Mir-153 Ofu-Mir-153 Ovu-Mir-153 Pau-Mir-153 Pca-Mir-153 Pcr-Mir-153 Pdu-Mir-153 Pfl-Mir-153 Pmi-Mir-153 Pve-Mir-153 Rph-Mir-153 Sko-Mir-153 Sme-Mir-153 Snu-Mir-153 Spu-Mir-153 Tur-Mir-153 War-Mir-153 Xbo-Mir-153

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013679800.1: 7240-7296 [+] Ensembl

Seed

UGCAUAG

Precursor
(pre-Mir +30nt flank)

CAUCUCCAACUAACCAACCUUAAUCGUCCAUCAUUUUUGUGUUUGGUGCAAUUUUGUUGACAUAAUUGCAUAGUCACAAAAGUGAUGGAUGGUGAAGGGACAACCCACCUUCCUGCU

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Structure

        10          20        30        40        50        
CAUCUCCAACUAACCAA--|   A                   UUUG        UUGU 
                   CCUU AUCGUCCAUCAUUUUUGUG    GUGCAAUU    U
                   GGAA UGGUAGGUAGUGAAAACAC    UACGUUAA    G
UCGUCCUUCCACCCAACAG^   G                   UGA-        UACA 
     110       100        90        80         70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut -1 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-153-P13_5p*

mirBase accession

None

Sequence

0- UCAUUUUUGUGUUUGGUGCAAUU -23

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Mature sequence

Lpo-Mir-153-P13_3p

mirBase accession

None

Sequence

35- UUGCAUAGUCACAAAAGUGAUG -57

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