MirGeneDB ID | Llo-Mir-193-P2 |
Family name |
MIR-193 (all species) |
Species |
Bootlace worm (Lineus longissimus) |
MiRBase ID |
|
Paralogues |
Llo-Mir-193-P2-v1
|
Orthologues |
Aca-Mir-193-P2b
Ami-Mir-193-P2a
Ami-Mir-193-P2b
Bge-Mir-193-P2
Bta-Mir-193-P2a
Bta-Mir-193-P2b
Cbr-Mir-193-P2-v1
Cel-Mir-193-P2-v1
Cfa-Mir-193-P2a
Cfa-Mir-193-P2b
Cja-Mir-193-P2a
Cja-Mir-193-P2b
Cli-Mir-193-P2a
Cli-Mir-193-P2b
Cmi-Mir-193-P2a
Cmi-Mir-193-P2b
Cpi-Mir-193-P2a
Cpi-Mir-193-P2b
Cpo-Mir-193-P2a
Cpo-Mir-193-P2b
Csc-Mir-193-P2v
Cte-Mir-193-P2
Dgr-Mir-193-P2
Dlo-Mir-193-P2
Dno-Mir-193-P2a
Dno-Mir-193-P2b
Dre-Mir-193-P2a
Dre-Mir-193-P2b1
Dre-Mir-193-P2b2
Ebu-Mir-193-P2
Eca-Mir-193-P2a
Eca-Mir-193-P2b
Efe-Mir-193-P2c-v1
Efe-Mir-193-P2d-v1
Efe-Mir-193-P2e-v1
Efe-Mir-193-P2f-v1
Ete-Mir-193-P2a
Ete-Mir-193-P2b
Gga-Mir-193-P2a
Gga-Mir-193-P2b
Gja-Mir-193-P2b
Gmo-Mir-193-P2b2
Hme-Mir-193-P2
Hru-Mir-193-P2
Hsa-Mir-193-P2a
Hsa-Mir-193-P2b
Laf-Mir-193-P2a
Laf-Mir-193-P2b
Lan-Mir-193-P2p
Lan-Mir-193-P2q
Lch-Mir-193-P2a
Lch-Mir-193-P2b
Lgi-Mir-193-P2
Loc-Mir-193-P2a
Loc-Mir-193-P2b
Lpo-Mir-193-P2n
Lpo-Mir-193-P2o
Lpo-Mir-193-P2r
Mal-Mir-193-P2b2
Mdo-Mir-193-P2a
Mgi-Mir-193-P2
Mml-Mir-193-P2a
Mml-Mir-193-P2b
Mmr-Mir-193-P2a
Mmr-Mir-193-P2b
Mmu-Mir-193-P2a
Mmu-Mir-193-P2b
Mun-Mir-193-P2a
Mun-Mir-193-P2b
Neu-Mir-193-P2a
Neu-Mir-193-P2b
Oan-Mir-193-P2a
Oan-Mir-193-P2b
Ocu-Mir-193-P2a
Ocu-Mir-193-P2b
Pab-Mir-193-P2a
Pab-Mir-193-P2b
Pau-Mir-193-P2
Pbv-Mir-193-P2a
Pbv-Mir-193-P2b
Pdu-Mir-193-P2
Pfl-Mir-193-P2
Pma-Mir-193-P2
Pmi-Mir-193-P2
Pve-Mir-193-P2
Rno-Mir-193-P2a
Rno-Mir-193-P2b
Rph-Mir-193-P2
Sha-Mir-193-P2a
Sha-Mir-193-P2b
Sko-Mir-193-P2
Snu-Mir-193-P2
Spt-Mir-193-P2a
Spt-Mir-193-P2b
Spu-Mir-193-P2
Sro-Mir-193-P2
Sto-Mir-193-P2a
Sto-Mir-193-P2b
Tca-Mir-193-P2
Tgu-Mir-193-P2a
Tgu-Mir-193-P2b
Tni-Mir-193-P2b2
Xbo-Mir-193-P2
Xla-Mir-193-P2a3
Xla-Mir-193-P2a4
Xtr-Mir-193-P2a
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_910592395.2_tnLinLong1) |
OU342992.1: 20512924-20512981 [-]
Ensembl
|
Clustered miRNAs (< 50kb from Mir-193-P2-v2) |
Mir-193-P2-v2
OU342992.1: 20512924-20512981 [-]
Ensembl
Mir-193-P2-v1
OU342992.1: 20512925-20512980 [-]
Ensembl
|
Variant | Llo-Mir-193-P2-v2 |
Seed |
AAUGCCC |
Precursor (pre-Mir +30nt flank) |
GAUCCAACGGUAGGGCUACGCUGGUAUAUUCGGGAUUUCUGAGGGUAUUUUGUGACUAUCAACUUACAAUGCCCUUUGAAAUCCUAAAUGUGCCGGUAAUUUUCAACUAUUCUGCCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GAUCCAACGGUAGGGCUAC--| CG U UU ACUA
GCUGGUAUAUU GGAUUUC GAGGGUAU UGUG U
UGGCCGUGUAA CCUAAAG UUCCCGUA ACAU C
CACCGUCUUAUCAACUUUUAA^ AU U -- UCAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Llo-Mir-193-P2-v2_5p* |
mirBase accession | None |
Sequence |
0- CGGGAUUUCUGAGGGUAUUUUGUG -24
Get sequence
|
Mature sequence |
Llo-Mir-193-P2-v2_3p |
mirBase accession | None |
Sequence |
36- CAAUGCCCUUUGAAAUCCUAAA -58
Get sequence
|
Variant | Llo-Mir-193-P2-v1 |
Seed |
CAAUGCC |
Precursor (pre-Mir +30nt flank) |
AUCCAACGGUAGGGCUACGCUGGUAUAUUCGGGAUUUCUGAGGGUAUUUUGUGACUAUCAACUUACAAUGCCCUUUGAAAUCCUAAAUGUGCCGGUAAUUUUCAACUAUUCUGCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AUCCAACGGUAGGGCUAC--| CG U UU CUA
GCUGGUAUAUU GGAUUUC GAGGGUAU UGUGA U
UGGCCGUGUAA CCUAAAG UUCCCGUA ACAUU C
ACCGUCUUAUCAACUUUUAA^ AU U -- CAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Llo-Mir-193-P2-v1_5p* |
mirBase accession | None |
Sequence |
0- GGGAUUUCUGAGGGUAUUUUGUGA -24
Get sequence
|
Mature sequence |
Llo-Mir-193-P2-v1_3p |
mirBase accession | None |
Sequence |
34- ACAAUGCCCUUUGAAAUCCUAA -56
Get sequence
|