MirGeneDB 3.0
107 microRNA genes with seed CAGUAGU
Sort by genome coordinates Motifs
MirGeneDB ID ▼ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Tni-Mir-199-P3 V tni-mir-199-3 MIR-199 CAGUAGU MIMAT0002960 None 3 11403070 11403130 - Gnathostomata Vertebrata 3 No 1
Sha-Mir-199-P3 V sha-mir-199a MIR-199 CAGUAGU None MIMAT0022785 GL841403.1 248965 249027 + Gnathostomata Vertebrata 3 No 1
Pbv-Mir-199-P3 V pbv-mir-199-1 MIR-199 CAGUAGU MIMAT0038996 MIMAT0038997 KE954297.1 75320 75382 - Gnathostomata Vertebrata 3 No 1
Pab-Mir-199-P3 V None MIR-199 CAGUAGU None None CM054699.2 10857876 10857938 - Gnathostomata Vertebrata 3 No 1
Ocu-Mir-199-P3 V ocu-mir-199a-1 MIR-199 CAGUAGU MIMAT0048319 MIMAT0048320 chrUn0216 201980 202042 + Gnathostomata Vertebrata 3 No 1
Neu-Mir-199-P3 V None MIR-199 CAGUAGU None None CM051816.1 79169451 79169513 + Gnathostomata Vertebrata 3 No 1
Mun-Mir-199-P3 V None MIR-199 CAGUAGU None None LR594634.1 197764292 197764353 + Gnathostomata Vertebrata 3 Unknown 1
Mmu-Mir-199-P3 V mmu-mir-199a-1 MIR-199 CAGUAGU MIMAT0000229 MIMAT0000230 chr9 21496498 21496559 - Gnathostomata Vertebrata 3 No 1
Mmr-Mir-199-P3 V mmr-mir-199-2 MIR-199 CAGUAGU None MIMAT0049179 CM007684.1 5272253 5272315 + Gnathostomata Vertebrata 3 No 1
Mml-Mir-199-P3 V mml-mir-199a-2 MIR-199 CAGUAGU MIMAT0006231 MIMAT0006232 CM014354.1 10581835 10581897 - Gnathostomata Vertebrata 3 No 1
Mdo-Mir-199-P3 V mdo-mir-199b-3 MIR-199 CAGUAGU MIMAT0031066 MIMAT0026678 3 430288133 430288195 + Gnathostomata Vertebrata 3 No 1
Mal-Mir-199-P3 V None MIR-199 CAGUAGU None None KV884793.1 1445883 1445943 - Gnathostomata Vertebrata 3 No
Loc-Mir-199-P3 V None MIR-199 CCAGUGU None None LG6 19340903 19340963 + Gnathostomata Vertebrata 2 No 1
Laf-Mir-199-P3 V None MIR-199 CAGUAGU None None GL010053.1 32928980 32929041 + Gnathostomata Vertebrata 3 Unknown 1
Hsa-Mir-199-P3 V hsa-mir-199a-1 MIR-199 CAGUAGU MIMAT0000231 MIMAT0000232 chr19 10817429 10817491 - Gnathostomata Vertebrata 3 No 1
Gmo-Mir-199-P3 V gmo-mir-199-2 MIR-199 CAGUAGU MIMAT0044025 MIMAT0044190 GeneScaffold_2428 217011 217071 + Gnathostomata Vertebrata 3 No
Gja-Mir-199-P3 V None MIR-199 CAGUAGU None None NW_015168135.1 22565 22625 - Gnathostomata Vertebrata 3 No 1
Ete-Mir-199-P3 V None MIR-199 CAGUAGU None None JH980426 1079700 1079760 + Gnathostomata Vertebrata 3 No 1
Eca-Mir-199-P3 V None MIR-199 CAGUAGU None None CM009154.1 51126963 51127025 + Gnathostomata Vertebrata 3 No 1
Dre-Mir-199-P3 V dre-mir-199-3 MIR-199 CAGUAGU MIMAT0001277 MIMAT0031922 chr3 47195159 47195219 - Gnathostomata Vertebrata 3 No
Cpo-Mir-199-P3 V cpo-mir-199-1 MIR-199 CAGUAGU MIMAT0047086 MIMAT0047087 scaffold_226 180917 180979 - Gnathostomata Vertebrata 3 No 1
Cpi-Mir-199-P3 V cpi-mir-199-1 MIR-199 CAGUAGU MIMAT0037818 MIMAT0037819 JH584417 604979 605041 + Gnathostomata Vertebrata 3 No 1
Cja-Mir-199-P3 V None MIR-199 CCAGUGU None None CM021936.1 9634758 9634820 - Gnathostomata Vertebrata 3 No 1
Cfa-Mir-199-P3 V cfa-mir-199-1 MIR-199 CAGUAGU None MIMAT0006642 chr20 50410923 50410985 + Gnathostomata Vertebrata 3 No 1
Bta-Mir-199-P3 V bta-mir-199a-2 MIR-199 CAGUAGU MIMAT0003544 MIMAT0003746 NC_037334.1 15283415 15283477 - Gnathostomata Vertebrata 3 No 1
Ami-Mir-199-P3 V ami-mir-199-1 MIR-199 CAGUAGU MIMAT0038216 MIMAT0038217 NW_017709389.1 179937 179999 - Gnathostomata Vertebrata 3 No 1
Aca-Mir-199-P3 V aca-mir-199a-1 MIR-199 CAGUAGU MIMAT0021834 None 2 80766239 80766301 - Gnathostomata Vertebrata 3 No 1
Lch-Mir-199-P3 None MIR-199 CAGUAGU None None JH126759.1 1560375 1560435 + Gnathostomata Vertebrata Unknown 1
Dre-Mir-199-P2b V None MIR-199 CAGUAGU None None chr5 63709623 63709683 - Clupeocephala Vertebrata 3 No
Tni-Mir-199-P2a V tni-mir-199-2 MIR-199 CAGUAGU MIMAT0002960 None 4 2900527 2900587 - Clupeocephala Vertebrata 3 No
Mal-Mir-199-P2a V None MIR-199 CAGUAGU None None KV884737.1 2027135 2027195 + Clupeocephala Vertebrata 3 No
Gmo-Mir-199-P2a V gmo-mir-199-3 MIR-199 CAGUAGU MIMAT0044025 MIMAT0044190 GeneScaffold_57 822222 822282 + Clupeocephala Vertebrata 3 No
Dre-Mir-199-P2a V dre-mir-199-2 MIR-199 CAGUAGU MIMAT0001277 MIMAT0003155 chr5 1376779 1376839 - Clupeocephala Vertebrata 3 No
Tgu-Mir-199-P2 V tgu-mir-199-1 MIR-199 CAGUAGU MIMAT0014645 MIMAT0014617 17 5878423 5878483 + Gnathostomata Vertebrata 3 No 1
Sto-Mir-199-P2 V None MIR-199 CAGUAGU None None BFAA01000443.1 504410 504470 - Gnathostomata Vertebrata 3 No
Sha-Mir-199-P2 V None MIR-199 CAGUAGU None None GL838915.1 7112 7172 - Gnathostomata Vertebrata 3 No
Rno-Mir-199-P2 V None MIR-199 CAGUAGU None None chr3 11348209 11348269 + Gnathostomata Vertebrata 3 No
Pbv-Mir-199-P2 V pbv-mir-199-3 MIR-199 CAGUAGU MIMAT0038998 MIMAT0038997 KE955379.1 131015 131075 + Gnathostomata Vertebrata 3 No 1
Pab-Mir-199-P2 V None MIR-199 CAGUAGU None None CM054692.2 119568748 119568808 - Gnathostomata Vertebrata 3 No
Ocu-Mir-199-P2 V None MIR-199 CAGUAGU None None 2005146567_corrected 71 131 - Gnathostomata Vertebrata 3 No
Oan-Mir-199-P2 V None MIR-199 CAGUAGU None None NC_041731.1 32349237 32349297 + Gnathostomata Vertebrata 3 No
Mmu-Mir-199-P2 V mmu-mir-199b MIR-199 CAGUAGU MIMAT0000672 MIMAT0004667 chr2 32318485 32318545 + Gnathostomata Vertebrata 3 No
Mmr-Mir-199-P2 V mmr-mir-199-3 MIR-199 CAGUAGU None MIMAT0049179 CM007670.1 90264656 90264716 - Gnathostomata Vertebrata 3 No
Mml-Mir-199-P2 V None MIR-199 CAGUAGU None None CM014350.1 12348318 12348378 + Gnathostomata Vertebrata 3 No
Mdo-Mir-199-P2 V mdo-mir-199b-1 MIR-199 CAGUAGU MIMAT0004125 MIMAT0026678 1 453998873 453998933 - Gnathostomata Vertebrata 3 No
Loc-Mir-199-P2 V None MIR-199 CCAGUGU None None LG21 12007937 12007997 - Gnathostomata Vertebrata 2 No
Laf-Mir-199-P2 V None MIR-199 CAGUAGU None None GL010033.1 29844206 29844266 + Gnathostomata Vertebrata 3 No
Hsa-Mir-199-P2 V hsa-mir-199b MIR-199 CAGUAGU MIMAT0000263 MIMAT0004563 chr9 128244745 128244805 - Gnathostomata Vertebrata 3 No
Gja-Mir-199-P2 V None MIR-199 CAGUAGU None None NW_015168135.1 22565 22625 - Gnathostomata Vertebrata 3 No 1
Gga-Mir-199-P2 V gga-mir-199-1 MIR-199 CAGUAGU MIMAT0001152 MIMAT0003721 17 5405926 5405986 + Gnathostomata Vertebrata 3 No 1
Ete-Mir-199-P2 V None MIR-199 CAGUAGU None None JH980366 6396369 6396428 + Gnathostomata Vertebrata 3 No
Eca-Mir-199-P2 V eca-mir-199b MIR-199 CAGUAGU MIMAT0013780 MIMAT0013781 CM009172.1 32139036 32139096 - Gnathostomata Vertebrata 3 No
Dno-Mir-199-P2 V dno-mir-199-2 MIR-199 CAGUAGU MIMAT0047739 MIMAT0047738 JH564958 197356 197416 + Gnathostomata Vertebrata 3 No
Cpo-Mir-199-P2 V cpo-mir-199-3 MIR-199 CAGUAGU MIMAT0047088 MIMAT0047087 scaffold_27 3923324 3923384 + Gnathostomata Vertebrata 3 No
Cpi-Mir-199-P2 V cpi-mir-199-3 MIR-199 CAGUAGU MIMAT0037818 MIMAT0037819 JH584612 7627614 7627674 - Gnathostomata Vertebrata 3 No 1
Cmi-Mir-199-P2 V None MIR-199 CAGUAGU None None KI635931.1 2775494 2775554 + Gnathostomata Vertebrata 3 No 1
Cli-Mir-199-P2 V cli-mir-199-2 MIR-199 CAGUAGU MIMAT0038573 MIMAT0038574 scaffold835 50412 50472 + Gnathostomata Vertebrata 3 No 1
Cja-Mir-199-P2 V None MIR-199 CCAGUGU None None CM021915.1 173904910 173904970 - Gnathostomata Vertebrata 3 No
Cfa-Mir-199-P2 V cfa-mir-199-3 MIR-199 CAGUAGU None MIMAT0006642 chr9 55262353 55262413 + Gnathostomata Vertebrata 3 No
Bta-Mir-199-P2 V bta-mir-199b MIR-199 CAGUAGU MIMAT0003821 None NC_037338.1 98855761 98855821 - Gnathostomata Vertebrata 3 No
Ami-Mir-199-P2 V ami-mir-199-3 MIR-199 CAGUAGU MIMAT0038216 MIMAT0038217 NW_017713629.1 13712829 13712889 + Gnathostomata Vertebrata 3 No 1
Aca-Mir-199-P2 V aca-mir-199b MIR-199 CAGUAGU MIMAT0021835 None GL343763.1 95918 95978 + Gnathostomata Vertebrata 3 No 1
Spt-Mir-199-P2 None MIR-199 CAGUAGU None None QEPC01005805.1 4604610 4604670 - Gnathostomata Vertebrata Unknown 1
Lch-Mir-199-P2 None MIR-199 CAGUAGU None None JH126677.1 2063652 2063712 + Gnathostomata Vertebrata Unknown 1
Xla-Mir-199-P1d V xla-mir-199 MIR-199 CAGUAGU MIMAT0046510 MIMAT0046511 NC_030731.1 80439840 80439900 + X. laevis Vertebrata 3 No 1
Xla-Mir-199-P1c V None MIR-199 CAGUAGU None None NC_030730.1 98473473 98473533 + X. laevis Vertebrata 3 No 1
Tni-Mir-199-P1b V tni-mir-199-1 MIR-199 CAGUAGU MIMAT0002960 None 15 2934183 2934243 + Clupeocephala Vertebrata 3 No 1
Mal-Mir-199-P1b V None MIR-199 CAGUAGU None None KV884892.1 231069 231129 + Clupeocephala Vertebrata 3 No 1
Gmo-Mir-199-P1b V gmo-mir-199-4 MIR-199 CAGUAGU MIMAT0044025 MIMAT0044026 contig309706 96 156 - Clupeocephala Vertebrata 3 No 1
Mal-Mir-199-P1a V None MIR-199 CAGUAGU None None KV884749.1 84487 84547 - Clupeocephala Vertebrata 3 No 1
Gmo-Mir-199-P1a V gmo-mir-199-1 MIR-199 CAGUAGU MIMAT0044025 MIMAT0044190 GeneScaffold_3026 81081 81141 + Clupeocephala Vertebrata 3 No 1
Dre-Mir-199-P1a V dre-mir-199-1 MIR-199 CAGUAGU MIMAT0001277 MIMAT0003155 chr20 14875474 14875534 + Clupeocephala Vertebrata 3 No 1
Xtr-Mir-199-P1 V xtr-mir-199a MIR-199 CAGUAGU MIMAT0003618 MIMAT0003619 chr4 97341514 97341574 + Gnathostomata Vertebrata 3 No 1
Tgu-Mir-199-P1 V tgu-mir-199-2 MIR-199 CAGUAGU MIMAT0014645 MIMAT0014617 8 31114364 31114424 - Gnathostomata Vertebrata 3 No 1
Sto-Mir-199-P1 V None MIR-199 CAGUAGU None None BFAA01007060.1 135645 135705 + Gnathostomata Vertebrata 3 No 1
Sha-Mir-199-P1 V None MIR-199 CAGUAGU None None GL856751.1 2995432 2995492 - Gnathostomata Vertebrata 3 No 1
Rno-Mir-199-P1 V rno-mir-199a MIR-199 CAGUAGU MIMAT0000872 MIMAT0004738 chr13 80125517 80125577 + Gnathostomata Vertebrata 3 No 1
Pbv-Mir-199-P1 V pbv-mir-199-2 MIR-199 CAGUAGU MIMAT0038996 MIMAT0038997 KE960262.1 14393 14453 + Gnathostomata Vertebrata 3 No 1
Pab-Mir-199-P1 V None MIR-199 CAGUAGU None None CM054679.2 77925142 77925202 + Gnathostomata Vertebrata 3 No 1
Ocu-Mir-199-P1 V ocu-mir-199a-2 MIR-199 CAGUAGU MIMAT0048319 MIMAT0048320 chr13 20628416 20628476 + Gnathostomata Vertebrata 3 No 1
Oan-Mir-199-P1 V oan-mir-199 MIR-199 CAGUAGU MIMAT0007172 MIMAT0007173 NC_041743.1 5356219 5356279 - Gnathostomata Vertebrata 3 No 1
Neu-Mir-199-P1 V None MIR-199 CAGUAGU None None CM051814.1 474270543 474270603 + Gnathostomata Vertebrata 3 No 1
Mun-Mir-199-P1 V None MIR-199 CAGUAGU None None LR594637.1 117477632 117477692 + Gnathostomata Vertebrata 3 No 1
Mmu-Mir-199-P1 V mmu-mir-199a-2 MIR-199 CAGUAGU MIMAT0000229 MIMAT0000230 chr1 162217844 162217904 + Gnathostomata Vertebrata 3 No 1
Mmr-Mir-199-P1 V mmr-mir-199-1 MIR-199 CAGUAGU None MIMAT0049179 CM007662.1 133515646 133515706 - Gnathostomata Vertebrata 3 No 1
Mml-Mir-199-P1 V mml-mir-199a-1 MIR-199 CAGUAGU MIMAT0002531 None CM014336.1 29445625 29445685 - Gnathostomata Vertebrata 3 No 1
Mdo-Mir-199-P1 V mdo-mir-199b-2 MIR-199 CAGUAGU MIMAT0031065 MIMAT0026678 2 64374174 64374234 - Gnathostomata Vertebrata 3 No 1
Loc-Mir-199-P1 V None MIR-199 CCAGUGU None None LG10 26292830 26292890 - Gnathostomata Vertebrata 2 No 1
Laf-Mir-199-P1 V None MIR-199 CAGUAGU None None GL010060.1 21505161 21505221 + Gnathostomata Vertebrata 3 No 1
Hsa-Mir-199-P1 V hsa-mir-199a-2 MIR-199 CAGUAGU MIMAT0000231 MIMAT0000232 chr1 172144554 172144614 - Gnathostomata Vertebrata 3 No 1
Gja-Mir-199-P1 V None MIR-199 CAGUAGU None None NW_015163693.1 22185 22245 - Gnathostomata Vertebrata 3 No 1
Gga-Mir-199-P1 V gga-mir-199-2 MIR-199 CAGUAGU MIMAT0001152 MIMAT0003721 8 5020651 5020711 + Gnathostomata Vertebrata 3 No 1
Ete-Mir-199-P1 V None MIR-199 CAGUAGU None None JH980318 26675833 26675893 + Gnathostomata Vertebrata 3 No 1
Eca-Mir-199-P1 V eca-mir-199a MIR-199 CAGUAGU MIMAT0012960 MIMAT0012961 CM009152.1 8123287 8123347 - Gnathostomata Vertebrata 3 No 1
Dno-Mir-199-P1 V dno-mir-199-1 MIR-199 CAGUAGU MIMAT0047737 MIMAT0047738 JH566029 1167422 1167482 - Gnathostomata Vertebrata 3 No 1
Cpo-Mir-199-P1 V cpo-mir-199-2 MIR-199 CAGUAGU MIMAT0047086 MIMAT0047087 scaffold_12 11462616 11462676 + Gnathostomata Vertebrata 3 No 1
Cpi-Mir-199-P1 V cpi-mir-199-2 MIR-199 CAGUAGU MIMAT0037818 MIMAT0037819 JH585174 227135 227195 - Gnathostomata Vertebrata 3 No 1
Cmi-Mir-199-P1 V None MIR-199 CAGUAGU None None KI635895.1 3660506 3660566 + Gnathostomata Vertebrata 3 No 1
Cli-Mir-199-P1 V cli-mir-199-1 MIR-199 CAGUAGU MIMAT0038573 MIMAT0038574 scaffold7 10450277 10450337 + Gnathostomata Vertebrata 3 No 1
Cja-Mir-199-P1 V None MIR-199 CCAGUGU None None CM021932.1 24123359 24123419 + Gnathostomata Vertebrata 3 No 1
Cfa-Mir-199-P1 V cfa-mir-199-2 MIR-199 CAGUAGU None MIMAT0006642 chr7 26812765 26812825 + Gnathostomata Vertebrata 3 No 1
Bta-Mir-199-P1 V bta-mir-199a-1 MIR-199 CAGUAGU MIMAT0003544 MIMAT0003746 NC_037343.1 39625357 39625417 - Gnathostomata Vertebrata 3 No 1
Ami-Mir-199-P1 V ami-mir-199-2 MIR-199 CAGUAGU MIMAT0038216 MIMAT0038217 NW_017709598.1 581638 581698 - Gnathostomata Vertebrata 3 No 1
Aca-Mir-199-P1 V aca-mir-199a-2 MIR-199 CAGUAGU MIMAT0021834 None AAWZ02037129 4079 4139 + Gnathostomata Vertebrata 3 No 1
Spt-Mir-199-P1 None MIR-199 CAGUAGU None None QEPC01000109.1 948310 948370 - Gnathostomata Vertebrata Unknown 1
Lch-Mir-199-P1 None MIR-199 CAGUAGU None None JH127017.1 811620 811680 - Gnathostomata Vertebrata Unknown 1
Pma-Mir-199-o2 V pma-mir-199b MIR-199 CAGUAGU MIMAT0019507 MIMAT0019508 NC_046118.1 9684029 9684090 + P. marinus Vertebrata 3 No

(red - mature/co-mature, blue - star)

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