MirGeneDB 3.0
75 Saccoglossus kowalevskii microRNA genes
Sort by genome coordinates Motifs Tissue expression
- +
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC To
Sko-Let-7 sko-let-7 LET-7 GAGGUAG MIMAT0009644 None NW_003153272.1 16483 16550 - Bilateria Bilateria Unknown 1
Sko-Mir-1 sko-mir-1 MIR-1 GGAAUGU MIMAT0019152 MIMAT0009607 NW_003119931.1 111783 111844 - Bilateria Bilateria No
Sko-Mir-7 sko-mir-7 MIR-7 GGAAGAC MIMAT0009608 MIMAT0019153 NW_003107091.1 410987 411047 + Bilateria Bilateria No 1 1 1
Sko-Mir-8 sko-mir-200 MIR-8 AAUACUG None MIMAT0009609 NW_003113469.1 168010 168070 + Nephrozoa Nephrozoa No 1
Sko-Mir-9 V sko-mir-9 MIR-9 CUUUGGU MIMAT0009610 MIMAT0009618 NW_003125887.1 164505 164564 - Bilateria Bilateria 2 No 1 1
Sko-Mir-10-P1 sko-mir-10 MIR-10 ACCCUGU MIMAT0009611 None NW_003106599.1 262535 262594 + Bilateria Eumetazoa Unknown 1
Sko-Mir-10-P2 sko-mir-100 MIR-10 ACCCGUA MIMAT0009623 None NW_003153272.1 24417 24475 - Bilateria Eumetazoa Unknown
Sko-Mir-10-P3 sko-mir-125a MIR-10 CCCUGAG MIMAT0009626 None NW_003153272.1 4565 4624 - Bilateria Eumetazoa No 1 1
Sko-Mir-22-P2 sko-mir-4834 MIR-22 CAGCUGC None MIMAT0020050 NW_003120936.1 115391 115447 - Bilateria Bilateria No
Sko-Mir-29-P1 sko-mir-29b MIR-29 AGCACCA MIMAT0019154 MIMAT0009613 NW_003118909.1 2536 2597 + Bilateria Bilateria No 1
Sko-Mir-29-P2 sko-mir-29a MIR-29 AGCACCA None MIMAT0009612 NW_003113965.1 294703 294763 + Bilateria Bilateria No 1 1
Sko-Mir-31 sko-mir-31 MIR-31 GGCAAGA MIMAT0009614 None NW_003132358.1 76906 76966 + Bilateria Bilateria Unknown 1
Sko-Mir-33 sko-mir-33 MIR-33 AGUGCUU None MIMAT0009615 NW_003137830.1 582683 582741 + Bilateria Bilateria No 1 1 1
Sko-Mir-34 sko-mir-34 MIR-34 GGCAGUG MIMAT0009616 MIMAT0019155 NW_003125894.1 114452 114510 - Bilateria Bilateria No 1
Sko-Mir-71 sko-mir-71 MIR-71 GAAAGAC MIMAT0009617 None NW_003142845.1 55183 55242 - Nephrozoa Nephrozoa Unknown 1
Sko-Mir-92-o9 sko-mir-92a MIR-92 AUUGCAC None MIMAT0009619 NW_003140819.1 55331 55388 - S. kowalevskii Bilateria No 1
Sko-Mir-92-o10 sko-mir-92b MIR-92 AUUGCAC None MIMAT0009620 NW_003140819.1 42177 42232 - S. kowalevskii Bilateria No 1
Sko-Mir-92-o11 None MIR-92 AUUGCAC None None NW_003140819.1 41465 41525 - S. kowalevskii Bilateria No 1 1
Sko-Mir-92-o12 sko-mir-92c MIR-92 AUUGCAC None MIMAT0009621 NW_003140819.1 40783 40840 - S. kowalevskii Bilateria No 1
Sko-Mir-96-P1 sko-mir-96 MIR-96 UUGGCAC MIMAT0009622 MIMAT0019156 NW_003114962.1 36626 36685 + Bilateria Bilateria No 1
Sko-Mir-96-P2 sko-mir-182 MIR-96 UUGGCAA MIMAT0009630 None NW_003114962.1 37045 37105 + Bilateria Bilateria Unknown 1 1
Sko-Mir-96-P3 sko-mir-183 MIR-96 AUGGCAC MIMAT0009631 None NW_003114962.1 34337 34398 + Bilateria Bilateria Unknown
Sko-Mir-103 sko-mir-2013 MIR-103 GCAGCAU None MIMAT0009737 NW_003120936.1 115062 115119 - Bilateria Bilateria No 1 1
Sko-Mir-124 sko-mir-124 MIR-124 AAGGCAC MIMAT0009624 MIMAT0009625 NW_003155742.1 335161 335221 - Bilateria Bilateria No
Sko-Mir-133 V sko-mir-133 MIR-133 UUGGUCC None MIMAT0009627 NW_003119931.1 54109 54168 - Bilateria Bilateria 2 No 1
Sko-Mir-137 sko-mir-137 MIR-137 AUUGCUU None MIMAT0009628 NW_003155247.1 92833 92890 - Bilateria Bilateria No 1 1
Sko-Mir-153 sko-mir-153 MIR-153 UGCAUAG None MIMAT0009629 NW_003155741.1 97673 97731 + Bilateria Bilateria No 1 1
Sko-Mir-184 sko-mir-184 MIR-184 GGACGGA MIMAT0009632 MIMAT0009633 NW_003155245.1 166962 167019 + Nephrozoa Nephrozoa No 1
Sko-Mir-190 sko-mir-190 MIR-190 GAUAUGU MIMAT0009634 None NW_003115462.1 20263 20322 + Bilateria Bilateria Unknown 1
Sko-Mir-193-P1c sko-mir-193a MIR-193 GGGAUUU MIMAT0019157 MIMAT0009635 NW_003119955.1 7658 7714 + Enteropneusta Bilateria No 1
Sko-Mir-193-P1d sko-mir-193b MIR-193 ACUGGCC None MIMAT0009677 NW_003119955.1 7997 8058 + Enteropneusta Bilateria No 1 1
Sko-Mir-193-P2 sko-mir-365 MIR-193 AAUGCCC MIMAT0019159 MIMAT0009643 NW_003119955.1 8988 9044 + Bilateria Bilateria No 1 1
Sko-Mir-210 sko-mir-210 MIR-210 UGUGCGU MIMAT0019158 MIMAT0009636 NW_003131854.1 344786 344843 - Bilateria Bilateria No
Sko-Mir-219 sko-mir-219 MIR-219 GAUUGUC MIMAT0022768 None NW_003111333.1 5536 5597 - Bilateria Bilateria Unknown 1 1
Sko-Mir-242 sko-mir-242 MIR-242 GCGUAGG MIMAT0009637 None NW_003141865.1 15153 15212 + Nephrozoa Nephrozoa Unknown 1
Sko-Mir-252-P1 sko-mir-252b MIR-252 UAAGUAG MIMAT0009639 None NW_003126934.1 19612 19671 - Bilateria Bilateria Unknown 1
Sko-Mir-252-P2 sko-mir-252a MIR-252 UAAGUAC MIMAT0009638 None NW_003126934.1 13977 14037 - Bilateria Bilateria Unknown 1 1
Sko-Mir-278 sko-mir-278 MIR-278 CGGUGGG None MIMAT0009640 NW_003116955.1 263028 263088 - Bilateria Bilateria No 1 1
Sko-Mir-281 sko-mir-281 MIR-281 GUCAUGG None MIMAT0009641 NW_003112485.1 217226 217284 + Nephrozoa Nephrozoa No 1
Sko-Mir-315 sko-mir-315 MIR-315 UUUGAUU MIMAT0009642 None NW_003137826.1 354009 354069 - Nephrozoa Nephrozoa Unknown 1
Sko-Mir-375 sko-mir-375 MIR-375 UUGUUCG None MIMAT0009683 NW_003116447.1 935599 935657 + Nephrozoa Nephrozoa Unknown 1
Sko-Mir-2001 sko-mir-2001 MIR-2001 UGUGACC MIMAT0009735 None NW_003126934.1 20664 20731 - Bilateria Bilateria Unknown 1
Sko-Mir-2006 sko-mir-2006 MIR-2006 AUCGCUA MIMAT0020047 MIMAT0020048 NW_003115458.1 124730 124786 + Ambulacraria Ambulacraria No 1 1 1
Sko-Mir-2007 sko-mir-2007 MIR-2007 AUUUCAG MIMAT0020023 MIMAT0020024 NW_003147285.1 82915 82978 + Ambulacraria Ambulacraria No 1 1
Sko-Mir-2008 V sko-mir-2008 MIR-2008 CAGCCUC None MIMAT0009738 NW_003125393.1 116441 116501 - Ambulacraria Ambulacraria 2 No 1
Sko-Mir-2011 sko-mir-2011 MIR-2011 CAAGGUG None MIMAT0009739 NW_003116456.1 416867 416928 + Ambulacraria Ambulacraria No 1 1
Sko-Mir-2012 sko-mir-2012 MIR-2012 AGUACUG MIMAT0009736 MIMAT0019164 NW_003142305.1 444456 444512 + Ambulacraria Ambulacraria No
Sko-Mir-4818-P1 sko-mir-4818a MIR-4818 UUGCACU None MIMAT0020009 NW_003137342.1 65108 65168 - Enteropneusta Enteropneusta No
Sko-Mir-4818-P2 sko-mir-4818d MIR-4818 AUUGCAC None MIMAT0020013 NW_003137342.1 64676 64736 - Enteropneusta Enteropneusta No 1
Sko-Mir-4818-P3 sko-mir-4818g MIR-4818 AUUGCAC MIMAT0020017 MIMAT0020018 NW_003137342.1 64550 64608 - Enteropneusta Enteropneusta No 1 1
Sko-Mir-4818-P4 sko-mir-4818b MIR-4818 AUUGCAC MIMAT0020010 MIMAT0020011 NW_003137342.1 64360 64419 - Enteropneusta Enteropneusta No 1
Sko-Mir-4818-P5 sko-mir-4818e MIR-4818 AUUGCAC MIMAT0020014 MIMAT0020015 NW_003137342.1 63417 63475 - Enteropneusta Enteropneusta No 1 1
Sko-Mir-4818-P6 sko-mir-4818f MIR-4818 AUUGCAC None MIMAT0020016 NW_003137342.1 63315 63374 - Enteropneusta Enteropneusta No 1
Sko-Mir-4818-P7 sko-mir-4818c MIR-4818 AUUGCAC None MIMAT0020012 NW_003137342.1 65488 65546 - S. kowalevskii Enteropneusta No 1
Sko-Mir-4819 sko-mir-4819 MIR-4819 CUUGGAC MIMAT0020019 MIMAT0020020 NW_003105607.1 246707 246763 + Enteropneusta Enteropneusta No
Sko-Mir-4820 sko-mir-4820 MIR-4820 GAGCUUC None MIMAT0020021 NW_003124899.1 533439 533498 + Enteropneusta Enteropneusta No 1
Sko-Mir-4823 sko-mir-4823 MIR-4823 CCAGUUU MIMAT0020027 MIMAT0020028 NW_003108582.1 122848 122914 - S. kowalevskii S. kowalevskii No 1
Sko-Mir-4824 sko-mir-4824 MIR-4824 AACUUAC MIMAT0020029 None NW_003135336.1 702311 702373 - Enteropneusta Enteropneusta Unknown 1
Sko-Mir-4825 sko-mir-4825 MIR-4825 CACACCU MIMAT0020030 MIMAT0020031 NW_003129871.1 130747 130808 - Enteropneusta Enteropneusta Yes 1 1
Sko-Mir-4826 sko-mir-4826 MIR-4826 AUCCGAU MIMAT0020032 MIMAT0020033 NW_003111485.1 19771 19832 + Enteropneusta Enteropneusta No 1
Sko-Mir-4828-P1 sko-mir-4828a MIR-4828 GUAAAUA None MIMAT0020036 NW_003123408.1 368928 368991 - Enteropneusta Enteropneusta No 1 1
Sko-Mir-4828-P2 None MIR-4828 GUAAAUG None None NW_003123408.1 368810 368871 - Enteropneusta Enteropneusta No 1 1 1
Sko-Mir-4828-P3 sko-mir-4828b MIR-4828 GUAAAUG None MIMAT0020037 NW_003123408.1 368589 368648 - Enteropneusta Enteropneusta No 1 1
Sko-Mir-4828-P4 None MIR-4828 GUAAAUA None None NW_003123408.1 368417 368477 - Enteropneusta Enteropneusta No 1
Sko-Mir-4829-P1 sko-mir-4829b MIR-4829 GUACUCU None MIMAT0020039 NW_003105101.1 415937 415996 - Enteropneusta Enteropneusta No 1
Sko-Mir-4829-P2 sko-mir-4829a MIR-4829 GUACUCU None MIMAT0020038 NW_003105101.1 415704 415768 - Enteropneusta Enteropneusta No 1
Sko-Mir-4829-P3 sko-mir-4829c MIR-4829 GUACUUU None MIMAT0020040 NW_003105101.1 415480 415541 - Enteropneusta Enteropneusta No 1
Sko-Mir-4830-P1 sko-mir-4830c MIR-4830 CUCUUGA MIMAT0020044 None NW_003129909.1 5451 5514 - S. kowalevskii Enteropneusta Unknown 1
Sko-Mir-4830-P2 sko-mir-4830b MIR-4830 CUCUUGA MIMAT0020042 MIMAT0020043 NW_003129909.1 5103 5163 - S. kowalevskii Enteropneusta Unknown 1
Sko-Mir-4830-P3 sko-mir-4830a MIR-4830 CUCUUGA MIMAT0020041 None NW_003129909.1 4632 4691 - S. kowalevskii Enteropneusta Unknown
Sko-Mir-4830-P4 sko-mir-4830d MIR-4830 CUCUUGA MIMAT0020056 MIMAT0020057 NW_003142845.1 32678 32738 - S. kowalevskii Enteropneusta No
Sko-Mir-4831 sko-mir-4831 MIR-4831 UCGGCAA None MIMAT0020045 NW_003120434.1 28404 28464 - Enteropneusta Enteropneusta No
Sko-Mir-4835 sko-mir-4835 MIR-4835 CAAGCAG MIMAT0020051 MIMAT0020052 NW_003137830.1 154894 154952 - Enteropneusta Enteropneusta No 1 1 1
Sko-Mir-4838 sko-mir-4838 MIR-4838 GCUCCUG None MIMAT0020058 NW_003151253.1 407594 407654 - Enteropneusta Enteropneusta No
Sko-Mir-4839 sko-mir-4839 MIR-4839 AAGUUUU MIMAT0020059 None NW_003107598.1 182979 183037 - Enteropneusta Enteropneusta Unknown

(red - mature/co-mature, blue - star)

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix