MirGeneDB 3.0
MirGeneDB ID

Sko-Mir-4818-P3

Family name MIR-4818 (all species)
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4818g
Paralogues Sko-Mir-4818-P1  Sko-Mir-4818-P2  Sko-Mir-4818-P4  Sko-Mir-4818-P5  Sko-Mir-4818-P6  Sko-Mir-4818-P7 
Orthologues Pfl-Mir-4818-P3 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)		 NW_003137342.1: 64550-64608 [-]
Clustered miRNAs
(< 50kb from Mir-4818-P3)		 Mir-4818-P6 NW_003137342.1: 63315-63374 [-]
Mir-4818-P5 NW_003137342.1: 63417-63475 [-]
Mir-4818-P4 NW_003137342.1: 64360-64419 [-]
Mir-4818-P3 NW_003137342.1: 64550-64608 [-]
Mir-4818-P2 NW_003137342.1: 64676-64736 [-]
Mir-4818-P1 NW_003137342.1: 65108-65168 [-]
Mir-4818-P7 NW_003137342.1: 65488-65546 [-]
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
AUAGCAGAAUGGUUUCUGUUUAGUUUGGAUCUCCAUUAUUGUAUGCUAUUAGUGAUGAUACUGGUCUAAUUGCACGCAAUAGUGGGGUUCUUAACAAAUACCCAUCCUGCCUGCCACCC
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Structure
        10           20        30        40        50         
AUAGCAGAAUGGUUUCU---|   A   U   U           UA   U     UGAUGA 
                    GUUU GUU GGA CUCCAUUAUUG  UGC AUUAG      \
                    UAAA CAA UCU GGGGUGAUAAC  ACG UAAUC      U
CCCACCGUCCGUCCUACCCA^   -   U   U           GC   U     UGGUCA 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Sko-Mir-4818-P3_5p*
mirBase accessionMIMAT0020017
Sequence 
0- CUCCAUUAUUGUAUGCUAUUAG -22
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Mature sequence

Sko-Mir-4818-P3_3p
mirBase accessionMIMAT0020018
Sequence 
37- AAUUGCACGCAAUAGUGGGGUU -59
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