MirGeneDB 2.1
MirGeneDB ID

Sko-Mir-4818-P7

Family name MIR-4818 (all species)
Seed AUUGCAC
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4818c
Paralogues Sko-Mir-4818-P1  Sko-Mir-4818-P2  Sko-Mir-4818-P3  Sko-Mir-4818-P4  Sko-Mir-4818-P5  Sko-Mir-4818-P6 
Orthologues
Node of Origin (locus) S. kowalevskii
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)		 NW_003137342.1: 65488-65546 [-]
Clustered miRNAs
(< 50kb from Mir-4818-P7)		 Mir-4818-P6 NW_003137342.1: 63315-63374 [-]
Mir-4818-P5 NW_003137342.1: 63417-63475 [-]
Mir-4818-P4 NW_003137342.1: 64360-64419 [-]
Mir-4818-P3 NW_003137342.1: 64550-64608 [-]
Mir-4818-P2 NW_003137342.1: 64676-64736 [-]
Mir-4818-P1 NW_003137342.1: 65108-65168 [-]
Mir-4818-P7 NW_003137342.1: 65488-65546 [-]
Precursor
(pre-Mir +30nt flank)
GUUUGGUGCAAGAAAAUCUGUUGUGUGGAACGCCACUGGAUUGCGCAAUUAGUUAAGUAAUUGAUCUAAUUGCACUUUACAGUGGUGUUCUAAUCUCCAGCCUAUCAUCGUAAAGUUUU
Get precursor sequence
Structure
        10        20           30        40        50         
GUUUGGUGCAAGAAAAUCU    UG---|            GAUUGC        UUAAGU 
                   GUUG     UGGAACGCCACUG      GCAAUUAG      \
                   CGAC     AUCUUGUGGUGAC      CGUUAAUC      A
UUUUGAAAUGCUACUAUC-    CUCUA^            AUUUCA        UAGUUA 
       110        100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Sko-Mir-4818-P7_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGCCACUGGAUUGCGCAAUUAG -22
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Mature sequence

Sko-Mir-4818-P7_3p
mirBase accessionMIMAT0020012
Sequence 
37- AAUUGCACUUUACAGUGGUGUU -59
Get sequence