MirGeneDB 2.1

MirGeneDB ID

Sko-Mir-4829-P1

Family name MIR-4829 (all species)
Seed GUACUCU
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4829b
Paralogues Sko-Mir-4829-P2  Sko-Mir-4829-P3 
Orthologues Pfl-Mir-4829-P1 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003105101.1: 415937-415996 [-]
Clustered miRNAs
(< 50kb from Mir-4829-P1)
Mir-4829-P3 NW_003105101.1: 415480-415541 [-]
Mir-4829-P2 NW_003105101.1: 415704-415768 [-]
Mir-4829-P1 NW_003105101.1: 415937-415996 [-]
Precursor
(pre-Mir +30nt flank)
AGGAUGGGUACUUUAUUGUAGGGGGUGAGCCAGACAUUUGGAAAAGCACAUUUUGACACAGGCAAUAAUGUACUCUUCCCAAUGCCUGGGUCAAUCUUUGCACUUAAUCGUCGUGGUAAC
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Structure
        10          20        30        40        50         
AGGAUGGGUACUUUAUU--|     GG   G    A    U    A  C     UUGACA 
                   GUAGGG  UGA CCAG CAUU GGAA AG ACAUU      C
                   CGUUUC  ACU GGUC GUAA CCUU UC UGUAA      A
CAAUGGUGCUGCUAAUUCA^     UA   G    C    C    C  A     UAACGG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To
Star sequence

Sko-Mir-4829-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- CAGACAUUUGGAAAAGCACAUU -22
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Mature sequence

Sko-Mir-4829-P1_3p

mirBase accessionMIMAT0020039
Sequence
38- UGUACUCUUCCCAAUGCCUGGG -60
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