| MirGeneDB ID | Sko-Mir-4819 |
|---|
| Family name |
MIR-4819 (all species) |
|---|
| Species |
Saccoglossus (Saccoglossus kowalevskii) |
|---|
| MiRBase ID |
sko-mir-4819
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Pfl-Mir-4819
|
|---|
| Node of Origin (locus) |
Enteropneusta
|
|---|
| Node of Origin (family) |
Enteropneusta
|
|---|
Genome context
(Skow_1.1) |
NW_003105607.1: 246707-246763 [+]
|
|---|
| Seed |
CUUGGAC |
|---|
Precursor
(pre-Mir +30nt flank) |
UUGCAUGUAUAUCAUGUAUGUGUUGCCCCCACUUGGACAAAAUGGAUGCGACGAGUACAAGGCCUCGCGUCAGUUUUGUCCAUGCGGGGGAGUUCUUUAGCAACGUUGGACUGUUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGCAUGUAUAUCAUGUAUGUGUUG--| ACU G CGAGUA
CCCCC UGGACAAAAU GAUGCGA \
GGGGG ACCUGUUUUG CUGCGCU C
AAUUGUCAGGUUGCAACGAUUUCUUGA^ CGU A CCGGAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Sko-Mir-4819_5p |
| mirBase accession | MIMAT0020019 |
|---|
| Sequence |
0- ACUUGGACAAAAUGGAUGCGAC -22
Get sequence
|
|---|
| Star sequence |
Sko-Mir-4819_3p* |
| mirBase accession | MIMAT0020020 |
|---|
| Sequence |
35- CGCGUCAGUUUUGUCCAUGCGG -57
Get sequence
|
|---|
