MirGeneDB 2.1

MirGeneDB ID

Sko-Mir-4828-P2

Family name MIR-4828 (all species)
Seed GUAAAUG
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID
Paralogues Sko-Mir-4828-P1  Sko-Mir-4828-P3  Sko-Mir-4828-P4 
Orthologues Pfl-Mir-4828-P2 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003123408.1: 368810-368871 [-]
Clustered miRNAs
(< 50kb from Mir-4828-P2)
Mir-4828-P3 NW_003123408.1: 368589-368648 [-]
Mir-4828-P1 NW_003123408.1: 368928-368991 [-]
Precursor
(pre-Mir +30nt flank)
UCUUCUAAUCUAAUUUUGUGUUGGCCGCUCCAAUCUCUGUGUGCAUUUUCAUCUGUUUUAGCCAAAGAACAGUAAAUGCCACUGAGAUUAGAGCGUUUAUCACUAAGACGACUUUCUGGAUU
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Structure
        10          20        30        40        50        60 
UCUUCUAAUCUAAUUUU--|  U  GC     C      U   U      UCAUCUGUUUUA 
                   GUG UG  CGCUC AAUCUC GUG GCAUUU            \
                   CAC AU  GCGAG UUAGAG CAC CGUAAA            G
UUAGGUCUUUCAGCAGAAU^  U  UU     A      U   -      UGACAAGAAACC 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Sko-Mir-4828-P2_5p*

mirBase accessionNone
Sequence
0- CAAUCUCUGUGUGCAUUUUCAUC -23
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Mature sequence

Sko-Mir-4828-P2_3p

mirBase accessionNone
Sequence
40- AGUAAAUGCCACUGAGAUUAGA -62
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