| MirGeneDB ID | Sko-Mir-2012 |
|---|
| Family name |
MIR-2012 (all species) |
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| Species |
Saccoglossus (Saccoglossus kowalevskii) |
|---|
| MiRBase ID |
sko-mir-2012
|
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| Paralogues |
|
|---|
| Orthologues |
Pfl-Mir-2012
Pmi-Mir-2012
Spu-Mir-2012
|
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| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
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Genome context
(Skow_1.1) |
NW_003142305.1: 444456-444512 [+]
|
|---|
| Seed |
AGUACUG |
|---|
Precursor
(pre-Mir +30nt flank) |
UGACAGCAAGUAGUCGGGCAUAUUACUUGGUAGUACUGGCAUAUGGACAUUGGUGAUUUAACUCAAUGUUCAUAUUUCAGUAUUUCCAAGUGAGAUGCAUUUUGCAGUCGAAGUCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGACAGCAAGUAGUCGG-- A U C -|UGA
GCAU UUACUUGG AGUACUGG AUAUGGACAUUG G U
CGUA AGUGAACC UUAUGACU UAUACUUGUAAC C U
UACUGAAGCUGACGUUUUA G U U U^AAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Sko-Mir-2012_5p |
| mirBase accession | MIMAT0009736 |
|---|
| Sequence |
0- UAGUACUGGCAUAUGGACAUUGG -23
Get sequence
|
|---|
| Star sequence |
Sko-Mir-2012_3p* |
| mirBase accession | MIMAT0019164 |
|---|
| Sequence |
34- AAUGUUCAUAUUUCAGUAUUUCC -57
Get sequence
|
|---|
