| MirGeneDB ID | Pfl-Mir-2012 |
|---|
| Family name |
MIR-2012 (all species) |
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| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Pmi-Mir-2012
Sko-Mir-2012
Spu-Mir-2012
|
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| Node of Origin (locus) |
Ambulacraria
|
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| Node of Origin (family) |
Ambulacraria
|
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Genome context
(Pfl) |
LD344014.1: 121392-121453 [+]
|
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| Seed |
AGUACUG |
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Precursor
(pre-Mir +30nt flank) |
AGCCACGAUUAUCAUUUAUAUCUUACCCAGUAGUACUGGCAUAUGGACAUUGGUAUGCAUUGAAACCCCAGUGUUCAUAUUCCAGUACAGCCAGGUGAGGUAUCAUAAGCGCACACAUCCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGCCACGAUUAUCAUUU--| CA A C GUAUGCA
AUAUCUUACC GU GUACUGG AUAUGGACAUUG U
UAUGGAGUGG CG CAUGACC UAUACUUGUGAC U
GACCUACACACGCGAAUAC^ AC A U CCCAAAG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Pfl-Mir-2012_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAGUACUGGCAUAUGGACAUUG -22
Get sequence
|
|---|
| Star sequence |
Pfl-Mir-2012_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
40- GUGUUCAUAUUCCAGUACAGCC -62
Get sequence
|
|---|
