MirGeneDB 2.1

MirGeneDB ID

Sko-Mir-4839

Family name MIR-4839 (all species)
Seed AAGUUUU
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4839
Paralogues
Orthologues Pfl-Mir-4839 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003107598.1: 182979-183037 [-]
Precursor
(pre-Mir +30nt flank)
CUGCUACGCUUACAUUGUUCAUUGAGUUGAUAAGUUUUUCCACUAUAUCUGUGUUGACAUUAAAUCCACAGAUAGUGGUAAGACUUGACCAACUUGUGUUCCAAUACCAUCAAAGACAG
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Structure
        10        20         30         40        50          
CUGCUACGCUUACAUUGUUCAUU-      A-|       U      UA      UUGACA 
                        GAGUUG  UAAGUUUU CCACUA  UCUGUG      \
                        UUCAAC  GUUCAGAA GGUGAU  AGACAC      U
GACAGAAACUACCAUAACCUUGUG      CA^       U      --      CUAAAU 
       110       100        90        80          70
Deep sequencing
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CommentAlthough there is no star recorded for Mir-4839 expression of the 5p arm is deeply conserved across enteropneusts.
3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Sko-Mir-4839_5p

mirBase accessionMIMAT0020059
Sequence
0- UAAGUUUUUCCACUAUAUCUGUG -23
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Star sequence

Sko-Mir-4839_3p* (predicted)

mirBase accessionNone
Sequence
38- CAGAUAGUGGUAAGACUUGAC -59
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