| MirGeneDB ID | Sko-Mir-4839 |
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| Family name |
MIR-4839 (all species) |
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| Species |
Saccoglossus (Saccoglossus kowalevskii) |
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| MiRBase ID |
sko-mir-4839
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| Paralogues |
|
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| Orthologues |
Pfl-Mir-4839
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| Node of Origin (locus) |
Enteropneusta
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| Node of Origin (family) |
Enteropneusta
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Genome context
(Skow_1.1) |
NW_003107598.1: 182979-183037 [-]
|
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| Seed |
AAGUUUU |
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Precursor
(pre-Mir +30nt flank) |
CUGCUACGCUUACAUUGUUCAUUGAGUUGAUAAGUUUUUCCACUAUAUCUGUGUUGACAUUAAAUCCACAGAUAGUGGUAAGACUUGACCAACUUGUGUUCCAAUACCAUCAAAGACAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUGCUACGCUUACAUUGUUCAUU- A-| U UA UUGACA
GAGUUG UAAGUUUU CCACUA UCUGUG \
UUCAAC GUUCAGAA GGUGAU AGACAC U
GACAGAAACUACCAUAACCUUGUG CA^ U -- CUAAAU
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Although there is no star recorded for Mir-4839 expression of the 5p arm is deeply conserved across enteropneusts. |
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Sko-Mir-4839_5p |
| mirBase accession | MIMAT0020059 |
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| Sequence |
0- UAAGUUUUUCCACUAUAUCUGUG -23
Get sequence
|
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| Star sequence |
Sko-Mir-4839_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
38- CAGAUAGUGGUAAGACUUGAC -59
Get sequence
|
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