MirGeneDB 2.1

MirGeneDB ID

Sko-Mir-4830-P4

Family name MIR-4830 (all species)
Seed CUCUUGA
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4830d
Paralogues Sko-Mir-4830-P1  Sko-Mir-4830-P2  Sko-Mir-4830-P3 
Orthologues
Node of Origin (locus) S. kowalevskii
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003142845.1: 32678-32738 [-]
Clustered miRNAs
(< 50kb from Mir-4830-P4)
Mir-4830-P4 NW_003142845.1: 32678-32738 [-]
Mir-71 NW_003142845.1: 55183-55242 [-]
Precursor
(pre-Mir +30nt flank)
AUGCCGGCAGUGGUUUGUGUCUUGCUGGGGUCUCUUGAGAGCCAUAUGGAGGAAUUGAAUAGUAUUGUCCUCCAUAGGUCCUCCAGAGUCCUCAGUAGAUAAAACCUAUCGUCUUGUUUCC
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Structure
        10           20        30        40        50        60
AUGCCGGCAGUGGUUUG---|    U       U    U   AG  A        AAUUGAA 
                    UGUCU GCUGGGG CUCU GAG  CC UAUGGAGG       U
                    AUAGA UGACUCC GAGA CUC  GG AUACCUCC       A
CCUUUGUUCUGCUAUCCAAA^    -       U    C   CU  -        UGUUAUG 
 .       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Sko-Mir-4830-P4_5p

mirBase accessionMIMAT0020056
Sequence
0- UCUCUUGAGAGCCAUAUGGAGG -22
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Star sequence

Sko-Mir-4830-P4_3p*

mirBase accessionMIMAT0020057
Sequence
40- UCCAUAGGUCCUCCAGAGUCC -61
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