MirGeneDB 2.1

MirGeneDB ID

Sko-Mir-4830-P1

Family name MIR-4830 (all species)
Seed CUCUUGA
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4830c
Paralogues Sko-Mir-4830-P2  Sko-Mir-4830-P3  Sko-Mir-4830-P4 
Orthologues
Node of Origin (locus) S. kowalevskii
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003129909.1: 5451-5514 [-]
Clustered miRNAs
(< 50kb from Mir-4830-P1)
Mir-4830-P3 NW_003129909.1: 4632-4691 [-]
Mir-4830-P2 NW_003129909.1: 5103-5163 [-]
Mir-4830-P1 NW_003129909.1: 5451-5514 [-]
Precursor
(pre-Mir +30nt flank)
AAUUAGUAUUCACCAGUGAACAUGACAGGAUCUCUUGAGAGCCAUAUGGAAGGAAUUGAUGUUCAAAAUGGCCUUCUUGUGGCCUCAAGAUGUCUUGUUUUGUUUCCAUUUACUGACUGACCUU
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Structure
        10          20        30        40        50        60  
AAUUAGUAUUCACCAGU--|    U        C       A      U      AAUUGAUG 
                   GAACA GACAGGAU UCUUGAG GCCAUA GGAAGG        U
                   UUUGU UUGUUCUG AGAACUC CGGUGU UCUUCC        U
UUCCAGUCAGUCAUUUACC^    U        U       -      -      GGUAAAAC 
  120       110       100        90         80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
To
Mature sequence

Sko-Mir-4830-P1_5p

mirBase accessionMIMAT0020044
Sequence
0- UCUCUUGAGAGCCAUAUGGAAGGA -24
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Star sequence

Sko-Mir-4830-P1_3p* (predicted)

mirBase accessionNone
Sequence
42- CUUCUUGUGGCCUCAAGAUGUC -64
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