| MirGeneDB ID | Sko-Mir-4825 |
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| Family name |
MIR-4825 (all species) |
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| Seed |
CACACCU |
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| Species |
Saccoglossus (Saccoglossus kowalevskii) |
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| MiRBase ID |
sko-mir-4825
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| Paralogues |
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| Orthologues |
Pfl-Mir-4825-P1a
Pfl-Mir-4825-P1b
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| Node of Origin (locus) |
Enteropneusta
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| Node of Origin (family) |
Enteropneusta
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Genome context
(Skow_1.1) |
NW_003129871.1: 130747-130808 [-]
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Precursor
(pre-Mir +30nt flank) |
UGAUAUGAUGUUUCUCUGUGGUGUUGAUAAGGGGACAGGGAUGGGUGUGGGGGUUAUAACAGUCGCACCUCACACCUUAACCUGUCAACUAUAUCAGCAUUUACAUAUACCACCAGUGCCAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGAUAUGAUGUUUCUCU- - -| GG GAU GUUAUAA
GU GGUGUUGAUA AG GACAGG GGGUGUGGGG \
CA UUACGACUAU UC CUGUCC UCCACACUCC C
CACCGUGACCACCAUAUA U A^ AA AAU ACGCUGA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Sko-Mir-4825_5p* |
| mirBase accession | MIMAT0020030 |
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| Sequence |
0- GGGGACAGGGAUGGGUGUGGGG -22
Get sequence
|
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| Mature sequence |
Sko-Mir-4825_3p |
| mirBase accession | MIMAT0020031 |
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| Sequence |
39- UCACACCUUAACCUGUCAACUAU -62
Get sequence
|
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