MirGeneDB 3.0
MirGeneDB ID

Sko-Mir-2007

Family name MIR-2007 (all species)
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-2007
Paralogues
Orthologues Pfl-Mir-2007  Pmi-Mir-2007  Spu-Mir-2007 
Node of Origin (locus) Ambulacraria
Node of Origin (family) Ambulacraria
Genome context
(Skow_1.1)		 NW_003147285.1: 82915-82978 [+]
Seed AUUUCAG
Precursor
(pre-Mir +30nt flank)		 
GGUGCUGACUGUGUGUGCGUUGCGUUGAUGUAUUUCAGGCGUUUAUACUGGUGAUGUUUGUUAUUACUUAUCUCCAGUGUACACCUGAAAUAUACCAACAAAUGCUUAGACAGCUGUGGAUCUA
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Structure
        10           20        30        40        50        60  
GGUGCUGACUGUGUGUG---|   GC    A           C  UU       U  UGUUUGU 
                    CGUU  GUUG UGUAUUUCAGG GU  AUACUGG GA       U
                    GUAA  CAAC AUAUAAAGUCC CA  UGUGACC CU       A
AUCUAGGUGUCGACAGAUUC^   A-    C           A  --       U  AUUCAUU 
  120       110       100         90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Mature sequence

Sko-Mir-2007_5p
mirBase accessionMIMAT0020023
Sequence 
0- UAUUUCAGGCGUUUAUACUGGUGA -24
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Star sequence

Sko-Mir-2007_3p*
mirBase accessionMIMAT0020024
Sequence 
42- UCCAGUGUACACCUGAAAUAUA -64
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