MirGeneDB 3.0
MirGeneDB ID

Pfl-Mir-2007

Family name MIR-2007 (all species)
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues
Orthologues Pmi-Mir-2007  Sko-Mir-2007  Spu-Mir-2007 
Node of Origin (locus) Ambulacraria
Node of Origin (family) Ambulacraria
Genome context
(Pfl)		 LD354612.1: 123309-123374 [+]
Seed AUUUCAG
Precursor
(pre-Mir +30nt flank)		 
GACCUAAGCAGUUUUUGCAUUUCAAUGAUGUAUUUCAGGCGUUAUACUGGUGAUGUGACUGUUAAAUUCCGAUCACCAGUGUUUCCCUGGAAUAUACCAAGGAAUGCCCUGUCCUACCGUCCAAGA
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Structure
        10           20        30        40        50        60   
GACCUAAGCAGUUUUUG---|     AA  A           CGUU          UGUGACUGU 
                    CAUUUC  UG UGUAUUUCAGG    AUACUGGUGA         \
                    GUAAGG  AC AUAUAAGGUCC    UGUGACCACU         U
AGAACCUGCCAUCCUGUCCC^     A-  C           CUU-          AGCCUUAAA 
    120       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Mature sequence

Pfl-Mir-2007_5p
mirBase accessionNone
Sequence 
0- UAUUUCAGGCGUUAUACUGGUGA -23
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Star sequence

Pfl-Mir-2007_3p*
mirBase accessionNone
Sequence 
44- ACCAGUGUUUCCCUGGAAUAUA -66
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