| MirGeneDB ID | Sko-Mir-4838 |
|---|
| Family name |
MIR-4838 (all species) |
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| Seed |
GCUCCUG |
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| Species |
Saccoglossus (Saccoglossus kowalevskii) |
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| MiRBase ID |
sko-mir-4838
|
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| Paralogues |
|
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| Orthologues |
Pfl-Mir-4838
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| Node of Origin (locus) |
Enteropneusta
|
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| Node of Origin (family) |
Enteropneusta
|
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Genome context
(Skow_1.1) |
NW_003151253.1: 407594-407654 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
AACUUGGUGUAAUAAAUAAUCUGUUGAGGUAACUGAUACAAGUAGGAUUGUCAGAUAACAUCCAUAAUCUGCUCCUGCUUCUAUCAGUUCCCUCGGCUGAUACUUAUCUAGAUUGCACACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AACUUGGUGUAAUAAAUA--| U U C UUGUCAGAUAAC
AUC GUUGAGG AACUGAUA AAGUAGGA \
UAG CGGCUCC UUGACUAU UUCGUCCU A
UCACACGUUAGAUCUAUUCA^ U C C CGUCUAAUACCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Sko-Mir-4838_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AACUGAUACAAGUAGGAUUGUC -22
Get sequence
|
|---|
| Mature sequence |
Sko-Mir-4838_3p |
| mirBase accession | MIMAT0020058 |
|---|
| Sequence |
39- UGCUCCUGCUUCUAUCAGUUCC -61
Get sequence
|
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