MirGeneDB 3.0
101 Ruditapes philippinarum microRNA genes
Sort by genome coordinates Motifs Tissue expression
- +
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Rph-Bantam-P21 None BANTAM GAGAUCA None None CM018540.1 15041974 15042034 - R. philippinarum Protostomia No 1
Rph-Bantam-P22 None BANTAM GAGAUCA None None CM018540.1 15041340 15041400 - R. philippinarum Protostomia No 1
Rph-Let-7 None LET-7 GAGGUAG None None CM018531.1 24991230 24991295 - Bilateria Bilateria No 1
Rph-Mir-1 None MIR-1 GGAAUGU None None CM018526.1 16504069 16504136 - Bilateria Bilateria No 1
Rph-Mir-2-o63 None MIR-2 AUCACAG None None CM018536.1 47738775 47738832 - R. philippinarum Protostomia No
Rph-Mir-2-o64 None MIR-2 AUCACAG None None CM018536.1 47738531 47738593 - R. philippinarum Protostomia No 1
Rph-Mir-2-o65 None MIR-2 AUCACAG None None CM018536.1 47738240 47738298 - R. philippinarum Protostomia No
Rph-Mir-2-o66 None MIR-2 AUCACAG None None CM018536.1 47737950 47738006 - R. philippinarum Protostomia No 1 1
Rph-Mir-2-o67 None MIR-2 AUCACAG None None QUSP01002410.1 64738 64796 - R. philippinarum Protostomia No 1 1
Rph-Mir-2-o68 None MIR-2 AUCACAG None None QUSP01002410.1 64540 64597 - R. philippinarum Protostomia No
Rph-Mir-2-o69 None MIR-2 AUCACAG None None QUSP01002410.1 63485 63542 - R. philippinarum Protostomia No
Rph-Mir-2-o70 None MIR-2 AUCACAG None None QUSP01002410.1 60291 60350 - R. philippinarum Protostomia No 1
Rph-Mir-2-o71 None MIR-2 AUCACAG None None QUSP01002410.1 60139 60197 - R. philippinarum Protostomia No 1
Rph-Mir-2-o72 None MIR-2 AUCACAG None None QUSP01001813.1 155017 155075 - R. philippinarum Protostomia No
Rph-Mir-2-o73 None MIR-2 AUCACAG None None QUSP01001813.1 154868 154926 - R. philippinarum Protostomia No 1
Rph-Mir-2-P12 None MIR-2 AUCACAG None None CM018536.1 47739104 47739161 - Lophotrochozoa Protostomia No 1
Rph-Mir-7 None MIR-7 GGAAGAC None None CM018526.1 31449765 31449825 + Bilateria Bilateria No 1 1
Rph-Mir-8 None MIR-8 AAUACUG None None CM018530.1 30403015 30403074 - Nephrozoa Nephrozoa No 1
Rph-Mir-9 None MIR-9 CUUUGGU None None CM018526.1 11142109 11142170 + Bilateria Bilateria No 1
Rph-Mir-10-P1 None MIR-10 ACCCUGU None None CM018531.1 24403455 24403513 + Bilateria Eumetazoa No
Rph-Mir-10-P2 None MIR-10 ACCCGUA None None CM018531.1 24992246 24992307 - Bilateria Eumetazoa No
Rph-Mir-10-P3 None MIR-10 CCCUGAG None None CM018531.1 24954546 24954609 - Bilateria Eumetazoa No 1
Rph-Mir-10-P5 None MIR-10 UACCCUG None None CM018531.1 24119047 24119105 + Lophotrochozoa Eumetazoa No
Rph-Mir-10-P6 None MIR-10 UCUCGUU None None CM018531.1 33041915 33041975 + Neotrochozoa Eumetazoa No 1
Rph-Mir-12 None MIR-12 GAGUAUU None None CM018538.1 42667417 42667474 + Protostomia Protostomia No 1
Rph-Mir-22-P1 None MIR-22 GCUGCCU None None CM018526.1 21804995 21805052 + Bilateria Bilateria No 1
Rph-Mir-22-P2 None MIR-22 AGCUGCC None None CM018526.1 21806394 21806455 + Bilateria Bilateria No 1
Rph-Mir-29-P1 None MIR-29 AGCACCA None None CM018527.1 5207953 5208020 + Bilateria Bilateria No
Rph-Mir-29-P2 None MIR-29 AGCACCA None None CM018527.1 5214533 5214591 + Bilateria Bilateria No 1 1
Rph-Mir-31 None MIR-31 GGCAAGA None None CM018524.1 42719725 42719786 - Bilateria Bilateria No 1
Rph-Mir-33-P15 None MIR-33 AAUGUUC None None CM018523.1 7580295 7580352 + R. philippinarum Bilateria No 1 1
Rph-Mir-33-P16 None MIR-33 AAUGUUC None None CM018523.1 7585243 7585300 + R. philippinarum Bilateria No 1 1
Rph-Mir-34 None MIR-34 GGCAGUG None None CM018531.1 6737344 6737402 - Bilateria Bilateria No 1
Rph-Mir-36 None MIR-36 CACCGGG None None CM018535.1 14872558 14872617 + Protostomia Protostomia Unknown
Rph-Mir-67 V None MIR-67 CACAACC None None CM018528.1 3998066 3998123 + Protostomia Protostomia 2 No 1
Rph-Mir-71 None MIR-71 GAAAGAC None None CM018536.1 47739342 47739400 - Nephrozoa Nephrozoa No 1
Rph-Mir-76 None MIR-76 UCGUUGU None None CM018539.1 20224323 20224382 - Nephrozoa Nephrozoa No 1
Rph-Mir-87-o19 None MIR-87 UGAGCAA None None CM018532.1 24178980 24179040 - R. philippinarum Protostomia No 1
Rph-Mir-87-o20 None MIR-87 UGAGCAA None None CM018532.1 24178272 24178331 - R. philippinarum Protostomia No 1
Rph-Mir-87-o21 None MIR-87 UGAGCAA None None CM018532.1 24177000 24177060 - R. philippinarum Protostomia No 1
Rph-Mir-92-o51 None MIR-92 AUUGCAC None None CM018539.1 17459757 17459814 + R. philippinarum Bilateria No
Rph-Mir-92-o52 None MIR-92 AUUGCAC None None CM018539.1 17477113 17477170 + R. philippinarum Bilateria No 1 1
Rph-Mir-92-o53 None MIR-92 AUUGCAC None None CM018539.1 17477279 17477336 + R. philippinarum Bilateria No 1
Rph-Mir-92-o54 None MIR-92 AUUGCAC None None CM018539.1 17477769 17477831 + R. philippinarum Bilateria No
Rph-Mir-92-o55 None MIR-92 AUUGCAC None None CM018539.1 17478661 17478716 + R. philippinarum Bilateria No
Rph-Mir-96-P1h None MIR-96 UUGGCAC None None CM018532.1 37520691 37520749 - Mollusca Bilateria No 1
Rph-Mir-96-P1i None MIR-96 UUUGGCA None None CM018524.1 23401561 23401620 + Mollusca Bilateria No
Rph-Mir-96-P2 None MIR-96 UUGGCAC None None CM018527.1 7313180 7313240 - Bilateria Bilateria Unknown
Rph-Mir-96-P3 None MIR-96 AUGGCAC None None CM018527.1 7319270 7319328 - Bilateria Bilateria Unknown 1
Rph-Mir-124-P27 None MIR-124 AAGGCAC None None CM018524.1 22474341 22474398 - R. philippinarum Bilateria No 1
Rph-Mir-124-P28 None MIR-124 AAGGCAC None None CM018524.1 22473101 22473158 - R. philippinarum Bilateria No 1
Rph-Mir-133 None MIR-133 UGGUCCC None None CM018526.1 16485503 16485563 - Bilateria Bilateria No 1
Rph-Mir-137 None MIR-137 UAUUGCU None None CM018529.1 6414679 6414734 + Bilateria Bilateria No 1
Rph-Mir-153 None MIR-153 UGCAUAG None None CM018532.1 10143081 10143138 - Bilateria Bilateria No 1 1
Rph-Mir-184 None MIR-184 GGACGGA None None CM018539.1 21939398 21939455 - Nephrozoa Nephrozoa No 1
Rph-Mir-190 None MIR-190 GAUAUGU None None CM018539.1 15813742 15813803 + Bilateria Bilateria No 1
Rph-Mir-193-P1 None MIR-193 ACUGGCC None None CM018528.1 31665224 31665280 - Bilateria Bilateria No 1
Rph-Mir-193-P2 None MIR-193 AAUGCCC None None CM018540.1 37387608 37387662 + Bilateria Bilateria No 1
Rph-Mir-216-P1 None MIR-216 AAUAUCA None None CM018538.1 42663442 42663499 + Nephrozoa Nephrozoa No 1 1
Rph-Mir-216-P2d None MIR-216 AAUCUCA None None CM018538.1 42665214 42665275 + Lophotrochozoa Nephrozoa No 1
Rph-Mir-219 None MIR-219 GAUUGUC None None QUSP01003057.1 48067 48123 - Bilateria Bilateria No
Rph-Mir-242 None MIR-242 UGCGUAG None None CM018527.1 22888371 22888428 - Nephrozoa Nephrozoa Unknown
Rph-Mir-252-P1 None MIR-252 UAAGUAG None None CM018525.1 43443779 43443838 - Bilateria Bilateria Unknown 1
Rph-Mir-277 None MIR-277 AAAUGCA None None CM018531.1 6739135 6739193 - Protostomia Protostomia No 1
Rph-Mir-278 None MIR-278 CGGUGGG None None QUSP01003331.1 12246 12301 - Bilateria Bilateria No 1
Rph-Mir-279 None MIR-279 GACUAGA None None CM018535.1 14862667 14862724 + Protostomia Protostomia No 1 1 1
Rph-Mir-281 None MIR-281 GUCAUGG None None QUSP01000934.1 316944 317000 + Nephrozoa Nephrozoa No 1
Rph-Mir-315 None MIR-315 UUUGAUU None None CM018527.1 7266497 7266556 + Nephrozoa Nephrozoa No
Rph-Mir-317 None MIR-317 GAACACA None None CM018531.1 6746836 6746893 - Protostomia Protostomia No 1
Rph-Mir-375-P17a None MIR-375 UUGUUCA None None CM018532.1 7264639 7264697 + R. philippinarum Nephrozoa No 1
Rph-Mir-375-P17b None MIR-375 UUGUUCA None None CM018532.1 7262678 7262736 + R. philippinarum Nephrozoa No 1
Rph-Mir-375-P17c None MIR-375 UUGUUCA None None CM018532.1 7261471 7261529 + R. philippinarum Nephrozoa No 1
Rph-Mir-375-P17d None MIR-375 UUGUUCA None None CM018532.1 7924759 7924817 - R. philippinarum Nephrozoa No 1
Rph-Mir-375-P18 None MIR-375 UUGUUCA None None CM018532.1 7922725 7922783 - R. philippinarum Nephrozoa No 1
Rph-Mir-375-P19a None MIR-375 UUGUUCA None None CM018532.1 7926030 7926089 - R. philippinarum Nephrozoa No 1
Rph-Mir-375-P19b None MIR-375 UUGUUCA None None CM018532.1 7260174 7260233 + R. philippinarum Nephrozoa No 1
Rph-Mir-750 None MIR-750 CAGAUCU None None CM018525.1 41611523 41611581 + Protostomia Protostomia No 1
Rph-Mir-1175 None MIR-1175 GAGAUUC None None CM018525.1 41615516 41615580 + Protostomia Protostomia No 1 1
Rph-Mir-1984-P1 None MIR-1984 GCCCUAU None None CM018530.1 35728759 35728815 - Gastropoda + Bivalvia + Scaphopoda Conchifera No 1
Rph-Mir-1984-P2 None MIR-1984 GCCAUUU None None CM018530.1 35717317 35717375 - Gastropoda + Bivalvia + Scaphopoda Conchifera No 1
Rph-Mir-1986 None MIR-1986 GGAUUUC None None CM018529.1 4837237 4837295 + Lophotrochozoa Lophotrochozoa No 1
Rph-Mir-1989 None MIR-1989 CAGCUGU None None QUSP01004575.1 5057 5116 + Platytrochozoa Platytrochozoa Unknown 1
Rph-Mir-1990-P2 None MIR-1990 GGGACUA None None CM018529.1 4832540 4832596 + Lophotrochozoa Lophotrochozoa No 1
Rph-Mir-1992 None MIR-1992 CAGCAGU None None CM018537.1 21686874 21686934 + Platytrochozoa Platytrochozoa No 1
Rph-Mir-1993 None MIR-1993 AUUAUGC None None CM018535.1 7170414 7170472 - Protostomia Protostomia No 1
Rph-Mir-1994-P1 None MIR-1994 GAGACAG None None CM018530.1 33665252 33665312 + Mollusca Lophotrochozoa No 1
Rph-Mir-1994-P2 None MIR-1994 GAGACAG None None CM018530.1 33665598 33665657 + Mollusca Lophotrochozoa No 1
Rph-Mir-2001 None MIR-2001 UUGUGAC None None CM018525.1 43444147 43444207 - Bilateria Bilateria No 1
Rph-Mir-2722 None MIR-2722 GGCGCCG None None CM018540.1 44280437 44280494 - Mollusca Mollusca No 1
Rph-Mir-12589 None MIR-12589 UUGUAGA None None CM018528.1 19123189 19123246 - Autobranchia Autobranchia No 1 1
Rph-Mir-12610 V None MIR-12610 AUAUCUG None None QUSP01001701.1 75446 75503 - Heteroconchia Heteroconchia 2 No 1
Rph-Mir-12611 None MIR-12611 CGAUAAC None None CM018524.1 2561619 2561676 + Heteroconchia Heteroconchia No 1 1
Rph-Mir-12612 None MIR-12612 CUACCUG None None QUSP01001701.1 75448 75505 + Heteroconchia Heteroconchia No
Rph-Novel-1-P1a None RPH-NOVEL-1 AUAUCUG None None None None None None R. philippinarum R. philippinarum No
Rph-Novel-1-P1b None RPH-NOVEL-1 AUAUCUG None None None None None None R. philippinarum R. philippinarum No
Rph-Novel-2 None RPH-NOVEL-2 CGGGACA None None CM018529.1 4830419 4830479 + R. philippinarum R. philippinarum No 1
Rph-Novel-3 None RPH-NOVEL-3 GUGAUAG None None CM018531.1 20317456 20317513 - R. philippinarum R. philippinarum No 1
Rph-Novel-4 None RPH-NOVEL-4 AAUGCCC None None CM018536.1 3932879 3932939 - R. philippinarum R. philippinarum No 1
Rph-Novel-5 None RPH-NOVEL-5 UAGGCCA None None CM018529.1 36733602 36733658 - R. philippinarum R. philippinarum No 1
Rph-Novel-6 None RPH-NOVEL-6 GUUUCAU None None CM018526.1 52477957 52478015 - R. philippinarum R. philippinarum No 1
Rph-Novel-7 None RPH-NOVEL-7 UUGAACG None None CM018532.1 2388912 2388969 - R. philippinarum R. philippinarum No 1

(red - mature/co-mature, blue - star)

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix