MirGeneDB 3.0
MirGeneDB ID

Ebu-Mir-128

Family name MIR-128 (all species)
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues
Orthologues Aca-Mir-128-P1  Aca-Mir-128-P2  Ami-Mir-128-P1  Ami-Mir-128-P2  Bta-Mir-128-P1  Bta-Mir-128-P2  Cfa-Mir-128-P1  Cfa-Mir-128-P2  Cja-Mir-128-P1  Cja-Mir-128-P2  Cli-Mir-128-P1  Cli-Mir-128-P2  Cmi-Mir-128-P1  Cmi-Mir-128-P2  Cmi-Mir-128-P3  Cpi-Mir-128-P1  Cpi-Mir-128-P2  Cpo-Mir-128-P1  Cpo-Mir-128-P2  Dno-Mir-128-P1  Dno-Mir-128-P2  Dre-Mir-128-P1  Dre-Mir-128-P2a  Dre-Mir-128-P2b  Eca-Mir-128-P1  Eca-Mir-128-P2  Ete-Mir-128-P1  Ete-Mir-128-P2  Gga-Mir-128-P1  Gga-Mir-128-P2  Gja-Mir-128-P1  Gja-Mir-128-P2  Gmo-Mir-128-P1  Gmo-Mir-128-P2a  Gmo-Mir-128-P2b  Hsa-Mir-128-P1  Hsa-Mir-128-P2  Laf-Mir-128-P1  Laf-Mir-128-P2  Lch-Mir-128-P1  Lch-Mir-128-P2  Lch-Mir-128-P3  Loc-Mir-128-P1  Loc-Mir-128-P2  Mal-Mir-128-P1  Mal-Mir-128-P2a  Mdo-Mir-128-P1  Mdo-Mir-128-P2  Mml-Mir-128-P1  Mml-Mir-128-P2  Mmr-Mir-128-P1  Mmr-Mir-128-P2  Mmu-Mir-128-P1  Mmu-Mir-128-P2  Mun-Mir-128-P1  Mun-Mir-128-P2  Neu-Mir-128-P1  Neu-Mir-128-P2  Oan-Mir-128-P1  Oan-Mir-128-P2  Ocu-Mir-128-P1  Ocu-Mir-128-P2  Pab-Mir-128-P1  Pab-Mir-128-P2  Pbv-Mir-128-P1  Pbv-Mir-128-P2  Pma-Mir-128-o1  Pma-Mir-128-o2  Pma-Mir-128-o3  Rno-Mir-128-P1  Rno-Mir-128-P2  Sha-Mir-128-P1  Sha-Mir-128-P2  Spt-Mir-128-P1  Spt-Mir-128-P2  Sto-Mir-128-P1  Sto-Mir-128-P2  Sto-Mir-128-P3  Tgu-Mir-128-P1  Tgu-Mir-128-P2  Tni-Mir-128-P1  Tni-Mir-128-P2a  Xla-Mir-128-P1a  Xla-Mir-128-P1b  Xla-Mir-128-P2c  Xla-Mir-128-P2d  Xtr-Mir-128-P1  Xtr-Mir-128-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Eburgeri_3)		 FYBX02009999.1: 842900-842961 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-128)		 Mir-128 FYBX02009999.1: 842900-842961 [-] UCSC Ensembl
Mir-133-P6b-v1 FYBX02009999.1: 875528-875587 [-] UCSC Ensembl
Mir-133-P6b-v2 FYBX02009999.1: 875528-875587 [-] UCSC Ensembl
Mir-1-P6b FYBX02009999.1: 876348-876408 [-] UCSC Ensembl
Seed CACAGUG
Precursor
(pre-Mir +30nt flank)		 
UUUUCUUUACGACAAAAGUAAGUCUAGACAAGGGGGCCGUGCCACUGUUCUGGGAGUGUGGCCAGAUCUCUCACAGUGAACCGGUCUCUUUGCCUUGGCUCGCUCUCUUCGGCAGCCAGAGA
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Structure
        10          20        30        40        50        60
UUUUCUUUACGACAAAA--|UA    U  A           UGC      UCUGGGAGUGU 
                   G  AGUC AG CAAGGGGGCCG   CACUGU           G
                   C  UCGG UC GUUUCUCUGGC   GUGACA           G
AGAGACCGACGGCUUCUCU^GC    U  C           CAA      CUCUCUAGACC 
120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ebu-Mir-128_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGGGGCCGUGCCACUGUUCUG -22
Get sequence
Mature sequence

Ebu-Mir-128_3p
mirBase accessionNone
Sequence 
40- UCACAGUGAACCGGUCUCUUUG -62
Get sequence