MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-128-P2

Family name MIR-128 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-128-1
Paralogues Ami-Mir-128-P1 
Orthologues Aca-Mir-128-P2  Bta-Mir-128-P2  Cfa-Mir-128-P2  Cja-Mir-128-P2  Cli-Mir-128-P2  Cmi-Mir-128-P2  Cpi-Mir-128-P2  Cpo-Mir-128-P2  Dno-Mir-128-P2  Dre-Mir-128-P2a  Dre-Mir-128-P2b  Ebu-Mir-128  Eca-Mir-128-P2  Ete-Mir-128-P2  Gga-Mir-128-P2  Gja-Mir-128-P2  Gmo-Mir-128-P2a  Gmo-Mir-128-P2b  Hsa-Mir-128-P2  Laf-Mir-128-P2  Lch-Mir-128-P2  Loc-Mir-128-P2  Mal-Mir-128-P2a  Mdo-Mir-128-P2  Mml-Mir-128-P2  Mmr-Mir-128-P2  Mmu-Mir-128-P2  Mun-Mir-128-P2  Neu-Mir-128-P2  Oan-Mir-128-P2  Ocu-Mir-128-P2  Pab-Mir-128-P2  Pbv-Mir-128-P2  Pma-Mir-128-o2  Rno-Mir-128-P2  Sha-Mir-128-P2  Spt-Mir-128-P2  Sto-Mir-128-P2  Tgu-Mir-128-P2  Tni-Mir-128-P2a  Xla-Mir-128-P2c  Xla-Mir-128-P2d  Xtr-Mir-128-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017714267.1: 34149786-34149841 [-] UCSC
Seed CACAGUG
Precursor
(pre-Mir +30nt flank)		 
GGUUUGACCUUAUUCAUGAGCUGUUGGAUUCGGGGCCGUAACACUGUCUGAGAGGGUUACAUUUCUCACAGUGAACCGGUCUCUUUUUCAGCUGCUUCCUGGCUUCCUUUUUAAGG
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Structure
        10          20        30        40        50        
GGUUUGACCUUAUUCAU--|   U      UUC       UAA      CU    GGGU 
                   GAGC GUUGGA   GGGGCCG   CACUGU  GAGA    U
                   UUCG CGACUU   CUCUGGC   GUGACA  CUCU    A
GGAAUUUUUCCUUCGGUCC^   U      UUU       CAA      --    UUAC 
    110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ami-Mir-128-P2_5p*
mirBase accessionMIMAT0038133
Sequence 
0- CGGGGCCGUAACACUGUCUGAGA -23
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Mature sequence

Ami-Mir-128-P2_3p
mirBase accessionMIMAT0038134
Sequence 
35- UCACAGUGAACCGGUCUCUUU -56
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