Mir-128-P2d

MirGeneDB ID

Xla-Mir-128-P2d

Family name

MIR-128 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-128-2

Paralogues

Xla-Mir-128-P1a Xla-Mir-128-P1b Xla-Mir-128-P2c

Orthologues

Aca-Mir-128-P2 Ami-Mir-128-P2 Bta-Mir-128-P2 Cfa-Mir-128-P2 Cja-Mir-128-P2 Cli-Mir-128-P2 Cmi-Mir-128-P2 Cpi-Mir-128-P2 Cpo-Mir-128-P2 Dno-Mir-128-P2 Ebu-Mir-128 Eca-Mir-128-P2 Ete-Mir-128-P2 Gga-Mir-128-P2 Gja-Mir-128-P2 Hsa-Mir-128-P2 Laf-Mir-128-P2 Lch-Mir-128-P2 Loc-Mir-128-P2 Mdo-Mir-128-P2 Mml-Mir-128-P2 Mmr-Mir-128-P2 Mmu-Mir-128-P2 Mun-Mir-128-P2 Neu-Mir-128-P2 Oan-Mir-128-P2 Ocu-Mir-128-P2 Pab-Mir-128-P2 Pbv-Mir-128-P2 Pma-Mir-128-o2 Rno-Mir-128-P2 Sha-Mir-128-P2 Spt-Mir-128-P2 Sto-Mir-128-P2 Tgu-Mir-128-P2 Xtr-Mir-128-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030741.1: 46578438-46578494 [+] UCSC Ensembl

Seed

CACAGUG

Precursor
(pre-Mir +30nt flank)

UCUGAUGCCAAGUGUUUGAGAGGCUGGAUUCGGGCCCGGAGCGCUGUCUGAGAGGGUUUACGUUUCUCACAGUGAACCGGUCUCUUUUUCAGUCUCUUUCUAAUCUUCCUGAUCUUU

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Structure

        10          20        30        40        50         
UCUGAUGCCAAGUGUUU--|          UUC   C    AG      CU    GGGUU 
                   GAGAGGCUGGA   GGG CCGG  CGCUGU  GAGA     \
                   UUCUCUGACUU   CUC GGCC  GUGACA  CUCU     U
UUUCUAGUCCUUCUAAUCU^          UUU   U    AA      --    UUGCA 
     110       100        90        80        70          60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-128-P2d_5p*

mirBase accession

MIMAT0046438

Sequence

0- CGGGCCCGGAGCGCUGUCUGAGA -23

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Mature sequence

Xla-Mir-128-P2d_3p

mirBase accession

MIMAT0046439

Sequence

36- UCACAGUGAACCGGUCUCUUU -57

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