MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-128-P1a

Family name MIR-128 (all species)
Seed CACAGUG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-128-P1b  Xla-Mir-128-P2c  Xla-Mir-128-P2d 
Orthologues Aca-Mir-128-P1  Ami-Mir-128-P1  Bta-Mir-128-P1  Cfa-Mir-128-P1  Cli-Mir-128-P1  Cmi-Mir-128-P1  Cpi-Mir-128-P1  Cpo-Mir-128-P1  Dno-Mir-128-P1  Dre-Mir-128-P1  Ebu-Mir-128  Ete-Mir-128-P1  Gga-Mir-128-P1  Gja-Mir-128-P1  Gmo-Mir-128-P1  Hsa-Mir-128-P1  Lch-Mir-128-P1  Loc-Mir-128-P1  Mal-Mir-128-P1  Mdo-Mir-128-P1  Mml-Mir-128-P1  Mmu-Mir-128-P1  Mun-Mir-128-P1  Oan-Mir-128-P1  Ocu-Mir-128-P1  Pbv-Mir-128-P1  Pma-Mir-128-o1  Rno-Mir-128-P1  Sha-Mir-128-P1  Spt-Mir-128-P1  Sto-Mir-128-P1  Tgu-Mir-128-P1  Tni-Mir-128-P1  Xtr-Mir-128-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030734.1: 64275444-64275501 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGAAAAAAUACGAUUGUGCAGCAGGAACGGGGGCCGUUACACUGUAAGAGAGUGAGUAGUAGGUCUCACAGUGAACCGGUCUCUUUUCUUACUGUAGCAAGUCACUUCAGAAAAGA
Get precursor sequence
Structure
        10          20        30        40        50         
AGUGAAAAAAUACGAUUG--|    C     C        UUA      AA    GUGAG 
                    UGCAG AGGAA GGGGGCCG   CACUGU  GAGA     U
                    AUGUC UUCUU UCUCUGGC   GUGACA  CUCU     A
AGAAAAGACUUCACUGAACG^    A     U        CAA      --    GGAUG 
      110       100        90        80        70          60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-128-P1a_5p*

mirBase accessionNone
Sequence
0- GGGGGCCGUUACACUGUAAGAGA -23
Get sequence
Mature sequence

Xla-Mir-128-P1a_3p

mirBase accessionNone
Sequence
37- UCACAGUGAACCGGUCUCUUU -58
Get sequence