Mir-128-P1a

MirGeneDB ID

Xla-Mir-128-P1a

Family name

MIR-128 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-128-P1b Xla-Mir-128-P2c Xla-Mir-128-P2d

Orthologues

Aca-Mir-128-P1 Ami-Mir-128-P1 Bta-Mir-128-P1 Cfa-Mir-128-P1 Cja-Mir-128-P1 Cli-Mir-128-P1 Cmi-Mir-128-P1 Cpi-Mir-128-P1 Cpo-Mir-128-P1 Dno-Mir-128-P1 Dre-Mir-128-P1 Ebu-Mir-128 Eca-Mir-128-P1 Ete-Mir-128-P1 Gga-Mir-128-P1 Gja-Mir-128-P1 Gmo-Mir-128-P1 Hsa-Mir-128-P1 Laf-Mir-128-P1 Lch-Mir-128-P1 Loc-Mir-128-P1 Mal-Mir-128-P1 Mdo-Mir-128-P1 Mml-Mir-128-P1 Mmr-Mir-128-P1 Mmu-Mir-128-P1 Mun-Mir-128-P1 Neu-Mir-128-P1 Oan-Mir-128-P1 Ocu-Mir-128-P1 Pab-Mir-128-P1 Pbv-Mir-128-P1 Pma-Mir-128-o1 Rno-Mir-128-P1 Sha-Mir-128-P1 Spt-Mir-128-P1 Sto-Mir-128-P1 Tgu-Mir-128-P1 Tni-Mir-128-P1 Xtr-Mir-128-P1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030734.1: 64275444-64275501 [+] UCSC Ensembl

Seed

CACAGUG

Precursor
(pre-Mir +30nt flank)

AGUGAAAAAAUACGAUUGUGCAGCAGGAACGGGGGCCGUUACACUGUAAGAGAGUGAGUAGUAGGUCUCACAGUGAACCGGUCUCUUUUCUUACUGUAGCAAGUCACUUCAGAAAAGA

Get precursor sequence

Structure

        10          20        30        40        50         
AGUGAAAAAAUACGAUUG--|    C     C        UUA      AA    GUGAG 
                    UGCAG AGGAA GGGGGCCG   CACUGU  GAGA     U
                    AUGUC UUCUU UCUCUGGC   GUGACA  CUCU     A
AGAAAAGACUUCACUGAACG^    A     U        CAA      --    GGAUG 
      110       100        90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Em

Star sequence

Xla-Mir-128-P1a_5p*

mirBase accession

None

Sequence

0- GGGGGCCGUUACACUGUAAGAGA -23

Get sequence

Mature sequence

Xla-Mir-128-P1a_3p

mirBase accession

None

Sequence

37- UCACAGUGAACCGGUCUCUUU -58

Get sequence