MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-128-P1

Family name MIR-128 (all species)
Seed CACAGUG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-128-3
Paralogues Gmo-Mir-128-P2a  Gmo-Mir-128-P2b 
Orthologues Aca-Mir-128-P1  Ami-Mir-128-P1  Bta-Mir-128-P1  Cfa-Mir-128-P1  Cli-Mir-128-P1  Cmi-Mir-128-P1  Cpi-Mir-128-P1  Cpo-Mir-128-P1  Dno-Mir-128-P1  Dre-Mir-128-P1  Ebu-Mir-128  Ete-Mir-128-P1  Gga-Mir-128-P1  Gja-Mir-128-P1  Hsa-Mir-128-P1  Lch-Mir-128-P1  Loc-Mir-128-P1  Mal-Mir-128-P1  Mdo-Mir-128-P1  Mml-Mir-128-P1  Mmu-Mir-128-P1  Mun-Mir-128-P1  Oan-Mir-128-P1  Ocu-Mir-128-P1  Pbv-Mir-128-P1  Pma-Mir-128-o1  Rno-Mir-128-P1  Sha-Mir-128-P1  Spt-Mir-128-P1  Sto-Mir-128-P1  Tgu-Mir-128-P1  Tni-Mir-128-P1  Xla-Mir-128-P1a  Xla-Mir-128-P1b  Xtr-Mir-128-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
scaffold05867: 2159-2217 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGUGAUGUGUGUGUGUGGCAGUAGGGAAGGGGGCCGUUACACUGUCAGAGAUGUAGUCUCAGGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGCCUCUACUCUUCAGGUUGACUG
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Structure
        10          20        30        40        50          
AGUGUGAUGUGUGUGUGU--|                   UUA      CA    UGUAGU 
                    GGCAGUAGGGAAGGGGGCCG   CACUGU  GAGA      \
                    CCGUCGUCCUUUUCUCUGGC   GUGACA  CUCU      C
GUCAGUUGGACUUCUCAUCU^                   CAA      --    GGGACU 
       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-128-P1_5p*

mirBase accessionNone
Sequence
0- GGGGGCCGUUACACUGUCAGAGA -23
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Mature sequence

Gmo-Mir-128-P1_3p

mirBase accessionMIMAT0044070
Sequence
38- UCACAGUGAACCGGUCUCUUU -59
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