MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-128-P1

Family name MIR-128 (all species)
Seed CACAGUG
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-128-P2 
Orthologues Aca-Mir-128-P1  Ami-Mir-128-P1  Bta-Mir-128-P1  Cfa-Mir-128-P1  Cli-Mir-128-P1  Cmi-Mir-128-P1  Cpi-Mir-128-P1  Cpo-Mir-128-P1  Dno-Mir-128-P1  Dre-Mir-128-P1  Ebu-Mir-128  Ete-Mir-128-P1  Gga-Mir-128-P1  Gmo-Mir-128-P1  Hsa-Mir-128-P1  Lch-Mir-128-P1  Loc-Mir-128-P1  Mal-Mir-128-P1  Mdo-Mir-128-P1  Mml-Mir-128-P1  Mmu-Mir-128-P1  Mun-Mir-128-P1  Oan-Mir-128-P1  Ocu-Mir-128-P1  Pbv-Mir-128-P1  Pma-Mir-128-o1  Rno-Mir-128-P1  Sha-Mir-128-P1  Spt-Mir-128-P1  Sto-Mir-128-P1  Tgu-Mir-128-P1  Tni-Mir-128-P1  Xla-Mir-128-P1a  Xla-Mir-128-P1b  Xtr-Mir-128-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015161983.1: 191480-191537 [+]
Precursor
(pre-Mir +30nt flank)
GGGGGGGCUGUUAUACUGUGCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUACUGUGUCUUGUUGCUCCUAAUAAAU
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Structure
        10          20        30        40        50         
GGGGGGGCUGUUAUACU--|UG   CU             UUA      AA    GUGAG 
                   G  CAG  GGAAGGGGGGCCG   CACUGU  GAGA     U
                   U  GUC  CCUUUUCUCUGGC   GUGACA  CUCU     A
UAAAUAAUCCUCGUUGUUC^GU   AU             CAA      --    GGACG 
      110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
To
Star sequence

Gja-Mir-128-P1_5p*

mirBase accessionNone
Sequence
0- GGGGGCCGUUACACUGUAAGAGA -23
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Mature sequence

Gja-Mir-128-P1_3p

mirBase accessionNone
Sequence
37- UCACAGUGAACCGGUCUCUUU -58
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