MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-128-P1

Family name MIR-128 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-128-2
Paralogues Ami-Mir-128-P2 
Orthologues Aca-Mir-128-P1  Bta-Mir-128-P1  Cfa-Mir-128-P1  Cja-Mir-128-P1  Cli-Mir-128-P1  Cmi-Mir-128-P1  Cpi-Mir-128-P1  Cpo-Mir-128-P1  Dno-Mir-128-P1  Dre-Mir-128-P1  Ebu-Mir-128  Eca-Mir-128-P1  Ete-Mir-128-P1  Gga-Mir-128-P1  Gja-Mir-128-P1  Gmo-Mir-128-P1  Hsa-Mir-128-P1  Laf-Mir-128-P1  Lch-Mir-128-P1  Loc-Mir-128-P1  Mal-Mir-128-P1  Mdo-Mir-128-P1  Mml-Mir-128-P1  Mmr-Mir-128-P1  Mmu-Mir-128-P1  Mun-Mir-128-P1  Neu-Mir-128-P1  Oan-Mir-128-P1  Ocu-Mir-128-P1  Pab-Mir-128-P1  Pbv-Mir-128-P1  Pma-Mir-128-o1  Rno-Mir-128-P1  Sha-Mir-128-P1  Spt-Mir-128-P1  Sto-Mir-128-P1  Tgu-Mir-128-P1  Tni-Mir-128-P1  Xla-Mir-128-P1a  Xla-Mir-128-P1b  Xtr-Mir-128-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017708624.1: 24805024-24805081 [-] UCSC
Seed CACAGUG
Precursor
(pre-Mir +30nt flank)		 
GAUUAGGUUCUUGUAAUGUGCAGUUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUACUGUGUCGUGUCACCCCUAAUUAAA
Get precursor sequence
Structure
        10          20        30        40        50         
GAUUAGGUUCUUGUAAU--|UG    U             UUA      AA    GUGAG 
                   G  CAGU GGAAGGGGGGCCG   CACUGU  GAGA     U
                   U  GUCA CCUUUUCUCUGGC   GUGACA  CUCU     A
AAAUUAAUCCCCACUGUGC^GU    U             CAA      --    GGACG 
      110       100        90        80        70          60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Ami-Mir-128-P1_5p*
mirBase accessionMIMAT0038135
Sequence 
0- GGGGGCCGUUACACUGUAAGAGA -23
Get sequence
Mature sequence

Ami-Mir-128-P1_3p
mirBase accessionMIMAT0038134
Sequence 
37- UCACAGUGAACCGGUCUCUUU -58
Get sequence