MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-128-o1

Family name MIR-128 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-128-1
Paralogues Pma-Mir-128-o2  Pma-Mir-128-o3 
Orthologues Aca-Mir-128-P1  Ami-Mir-128-P1  Bta-Mir-128-P1  Cfa-Mir-128-P1  Cja-Mir-128-P1  Cli-Mir-128-P1  Cmi-Mir-128-P1  Cpi-Mir-128-P1  Cpo-Mir-128-P1  Dno-Mir-128-P1  Dre-Mir-128-P1  Ebu-Mir-128  Eca-Mir-128-P1  Ete-Mir-128-P1  Gga-Mir-128-P1  Gja-Mir-128-P1  Gmo-Mir-128-P1  Hsa-Mir-128-P1  Laf-Mir-128-P1  Lch-Mir-128-P1  Loc-Mir-128-P1  Mal-Mir-128-P1  Mdo-Mir-128-P1  Mml-Mir-128-P1  Mmr-Mir-128-P1  Mmu-Mir-128-P1  Mun-Mir-128-P1  Neu-Mir-128-P1  Oan-Mir-128-P1  Ocu-Mir-128-P1  Pab-Mir-128-P1  Pbv-Mir-128-P1  Rno-Mir-128-P1  Sha-Mir-128-P1  Spt-Mir-128-P1  Sto-Mir-128-P1  Tgu-Mir-128-P1  Tni-Mir-128-P1  Xla-Mir-128-P1a  Xla-Mir-128-P1b  Xtr-Mir-128-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046078.1: 9991857-9991920 [+] UCSC Ensembl
Seed CACAGUG
Precursor
(pre-Mir +30nt flank)		 
CACAGUGAUGGACGACGUGGGUGUCCGGGCUGGAGGCCGUCACACUGCCCGAGAGCAAUGAGCCUGGCUGUCUCACAGUGAACCGGUCUCUUUCCCUGGCAACCCCCCCCCCCCCCUGCCCUCG
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Structure
        10         20         30        40        50        60  
CACAGUGAUGGACGACGU-   -|   C   CU        UCA     CCC    GCAAUGA 
                   GGG UGUC GGG  GGAGGCCG   CACUG   GAGA       G
                   CCC ACGG CCC  UCUCUGGC   GUGAC   CUCU       C
GCUCCCGUCCCCCCCCCCC   A^   U   UU        CAA     A--    GUCGGUC 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-128-o1_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGAGGCCGUCACACUGCCCGAGA -24
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Mature sequence

Pma-Mir-128-o1_3p
mirBase accessionMIMAT0019449
Sequence 
42- UCACAGUGAACCGGUCUCUUUC -64
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