MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-128-P2a

Family name MIR-128 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-128-1
Paralogues Gmo-Mir-128-P1  Gmo-Mir-128-P2b 
Orthologues Aca-Mir-128-P2  Ami-Mir-128-P2  Bta-Mir-128-P2  Cfa-Mir-128-P2  Cja-Mir-128-P2  Cli-Mir-128-P2  Cmi-Mir-128-P2  Cpi-Mir-128-P2  Cpo-Mir-128-P2  Dno-Mir-128-P2  Dre-Mir-128-P2a  Ebu-Mir-128  Eca-Mir-128-P2  Ete-Mir-128-P2  Gga-Mir-128-P2  Gja-Mir-128-P2  Hsa-Mir-128-P2  Laf-Mir-128-P2  Lch-Mir-128-P2  Loc-Mir-128-P2  Mal-Mir-128-P2a  Mdo-Mir-128-P2  Mml-Mir-128-P2  Mmr-Mir-128-P2  Mmu-Mir-128-P2  Mun-Mir-128-P2  Neu-Mir-128-P2  Oan-Mir-128-P2  Ocu-Mir-128-P2  Pab-Mir-128-P2  Pbv-Mir-128-P2  Pma-Mir-128-o2  Rno-Mir-128-P2  Sha-Mir-128-P2  Spt-Mir-128-P2  Sto-Mir-128-P2  Tgu-Mir-128-P2  Tni-Mir-128-P2a  Xtr-Mir-128-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig69349: 317-375 [+] UCSC Ensembl
Seed CACAGUG
Precursor
(pre-Mir +30nt flank)		 
GAGAACAGGAUCGACCUGGGGAGCGGGAUACGGGGCCGGAACACUGCCUGAGAGGUCCGUAACGAUUCUCACAGUGAACCGGUCUCUUUUCCCGCCCCCUGCUGCUCAGCGACAACACA
Get precursor sequence
Structure
        10           20        30        40        50          
GAGAACAGGAUCGACCU---|   A      UAC        AA     CC     GGUCCG 
                    GGGG GCGGGA   GGGGCCGG  CACUG  UGAGA      \
                    CCCC CGCCCU   CUCUGGCC  GUGAC  ACUCU      U
ACACAACAGCGACUCGUCGU^   -      UUU        AA     --     UAGCAA 
       110       100         90        80          70
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut -1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-128-P2a_5p*
mirBase accessionMIMAT0044069
Sequence 
0- CGGGGCCGGAACACUGCCUGAGA -23
Get sequence
Mature sequence

Gmo-Mir-128-P2a_3p
mirBase accessionMIMAT0044070
Sequence 
38- UCACAGUGAACCGGUCUCUUU -59
Get sequence