Mir-128-P2a

MirGeneDB ID

Tni-Mir-128-P2a

Family name

MIR-128 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-128-1

Paralogues

Tni-Mir-128-P1

Orthologues

Aca-Mir-128-P2 Ami-Mir-128-P2 Bta-Mir-128-P2 Cfa-Mir-128-P2 Cja-Mir-128-P2 Cli-Mir-128-P2 Cmi-Mir-128-P2 Cpi-Mir-128-P2 Cpo-Mir-128-P2 Dno-Mir-128-P2 Dre-Mir-128-P2a Ebu-Mir-128 Eca-Mir-128-P2 Ete-Mir-128-P2 Gga-Mir-128-P2 Gja-Mir-128-P2 Gmo-Mir-128-P2a Hsa-Mir-128-P2 Laf-Mir-128-P2 Lch-Mir-128-P2 Loc-Mir-128-P2 Mal-Mir-128-P2a Mdo-Mir-128-P2 Mml-Mir-128-P2 Mmr-Mir-128-P2 Mmu-Mir-128-P2 Mun-Mir-128-P2 Neu-Mir-128-P2 Oan-Mir-128-P2 Ocu-Mir-128-P2 Pab-Mir-128-P2 Pbv-Mir-128-P2 Pma-Mir-128-o2 Rno-Mir-128-P2 Sha-Mir-128-P2 Spt-Mir-128-P2 Sto-Mir-128-P2 Tgu-Mir-128-P2 Xtr-Mir-128-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

3: 4160313-4160370 [-] UCSC Ensembl

Seed

CACAGUG

Precursor
(pre-Mir +30nt flank)

GCAGAAGUUUAGCACCGGAGAGGCUGCAUACGGGGCCGGGACGCUGUUUGAGAGUCCACUAUGAAUCUCACAGUGAACCGGUCUCUUUUGCAGCCCCUUACUCCUCACCUGCUGCAGC

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Structure

        10          20        30        40        50         
GCAGAAGUUUAGCACCG--|  A       UAC        GA      UU    GUCCA 
                   GAG GGCUGCA   GGGGCCGG  CGCUGU  GAGA     C
                   UUC CCGACGU   CUCUGGCC  GUGACA  CUCU     U
CGACGUCGUCCACUCCUCA^  C       UUU        AA      --    AAGUA 
      110       100        90        80        70          60

Deep sequencing

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Comment

There is a second Drosha cut -1 on the 3p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-128-P2a_5p*

mirBase accession

None

Sequence

0- CGGGGCCGGGACGCUGUUUGAGA -23

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Mature sequence

Tni-Mir-128-P2a_3p

mirBase accession

MIMAT0003019

Sequence

37- UCACAGUGAACCGGUCUCUUU -58

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