Mir-128-P2

MirGeneDB ID

Sto-Mir-128-P2

Family name

MIR-128 (all species)

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-128-P1 Sto-Mir-128-P3

Orthologues

Aca-Mir-128-P2 Ami-Mir-128-P2 Bta-Mir-128-P2 Cfa-Mir-128-P2 Cja-Mir-128-P2 Cli-Mir-128-P2 Cmi-Mir-128-P2 Cpi-Mir-128-P2 Cpo-Mir-128-P2 Dno-Mir-128-P2 Dre-Mir-128-P2a Dre-Mir-128-P2b Ebu-Mir-128 Eca-Mir-128-P2 Ete-Mir-128-P2 Gga-Mir-128-P2 Gja-Mir-128-P2 Gmo-Mir-128-P2a Gmo-Mir-128-P2b Hsa-Mir-128-P2 Laf-Mir-128-P2 Lch-Mir-128-P2 Loc-Mir-128-P2 Mal-Mir-128-P2a Mdo-Mir-128-P2 Mml-Mir-128-P2 Mmr-Mir-128-P2 Mmu-Mir-128-P2 Mun-Mir-128-P2 Neu-Mir-128-P2 Oan-Mir-128-P2 Ocu-Mir-128-P2 Pab-Mir-128-P2 Pbv-Mir-128-P2 Pma-Mir-128-o2 Rno-Mir-128-P2 Sha-Mir-128-P2 Spt-Mir-128-P2 Tgu-Mir-128-P2 Tni-Mir-128-P2a Xla-Mir-128-P2c Xla-Mir-128-P2d Xtr-Mir-128-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01002217.1: 155517-155572 [+]

Seed

CACAGUG

Precursor
(pre-Mir +30nt flank)

AUAAUCAGCAUUUCUGUGAGCUGUUGAAUACGGGGCCGGAACACUGUCUGAGAGUACUAGAUUUCUCACAGUGAACCGGUCUCUUUUUCAGCUGCUUCCUUAACUGCGGAGCAAAA

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Structure

        10          20        30        40        50       
AUAAUCAGCAUUUCUGU--|   U      UAC        AA      CU  GAGUA 
                   GAGC GUUGAA   GGGGCCGG  CACUGU  GA     C
                   UUCG CGACUU   CUCUGGCC  GUGACA  CU     U
AAAACGAGGCGUCAAUUCC^   U      UUU        AA      CU  UUAGA 
    110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Sto-Mir-128-P2_5p*

mirBase accession

None

Sequence

0- CGGGGCCGGAACACUGUCUGA -21

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Mature sequence

Sto-Mir-128-P2_3p

mirBase accession

None

Sequence

35- UCACAGUGAACCGGUCUCUUU -56

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