MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-128-P3

Family name MIR-128 (all species)
Seed CACAGUG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-128-P1  Lch-Mir-128-P2 
Orthologues Cmi-Mir-128-P3  Ebu-Mir-128  Pma-Mir-128-o3  Sto-Mir-128-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH127045.1: 803760-803818 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAGCUGGCGUUCUUCGAGGUUGUGGAAAGGGGACCGUGCCACUGUCUGGGAGGGAGUAGCAGGCUCUCACAGUGAACCGGUCUCUCUUCCUCGGCUUUCAUUUCCAGCACGAGCACA
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Structure
        10          20        30        40        50         
UGGAGCUGGCGUUCUUC--|      U    AG       UGC      CU  GAGGGAG 
                   GAGGUUG GGAA  GGGACCG   CACUGU  GG       \
                   UUUCGGC CCUU  CUCUGGC   GUGACA  CU       U
ACACGAGCACGACCUUUAC^      U    CU       CAA      CU  CGGACGA 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-128-P3_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGGACCGUGCCACUGUCUGG -21
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Mature sequence

Lch-Mir-128-P3_3p (predicted)

mirBase accessionNone
Sequence
38- UCACAGUGAACCGGUCUCUCU -59
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