MirGeneDB

Gene name

Cbr-Mir-193-P1-v2

Family name MIR-193 (all species)
MiRBase ID cbr-mir-240
Paralogues Cbr-Mir-193-P1-v1  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2 
Orthologues Aae-Mir-193-P1  Aca-Mir-193-P1a  Ami-Mir-193-P1a  Ami-Mir-193-P1b  Bfl-Mir-193-P1e  Bfl-Mir-193-P1f  Bge-Mir-193-P1  Bta-Mir-193-P1a  Bta-Mir-193-P1b  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1a  Cfa-Mir-193-P1b  Cgi-Mir-193-P1  Cli-Mir-193-P1b  Cpi-Mir-193-P1a  Cpi-Mir-193-P1b  Cpo-Mir-193-P1a  Cpo-Mir-193-P1b  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1a  Dno-Mir-193-P1b  Dpu-Mir-193-P1  Dre-Mir-193-P1a1  Dre-Mir-193-P1a2  Dre-Mir-193-P1b  Efe-Mir-193-P1g  Efe-Mir-193-P1h  Ete-Mir-193-P1a  Ete-Mir-193-P1b  Gga-Mir-193-P1a  Gga-Mir-193-P1b  Hme-Mir-193-P1  Hsa-Mir-193-P1a  Hsa-Mir-193-P1b  Isc-Mir-193-P1  Lan-Mir-193-P1i  Lan-Mir-193-P1j  Lgi-Mir-193-P1  Mdo-Mir-193-P1a  Mdo-Mir-193-P1b  Mml-Mir-193-P1a  Mml-Mir-193-P1b  Mmu-Mir-193-P1a  Mmu-Mir-193-P1b  Ocu-Mir-193-P1a  Ocu-Mir-193-P1b  Pfl-Mir-193-P1c  Pfl-Mir-193-P1d  Pmi-Mir-193-P1  Rno-Mir-193-P1a  Rno-Mir-193-P1b  Sha-Mir-193-P1a  Sha-Mir-193-P1b  Sko-Mir-193-P1c  Sko-Mir-193-P1d  Tca-Mir-193-P1  Tgu-Mir-193-P1a  Tgu-Mir-193-P1b  Xtr-Mir-193-P1b 
Node of Origin (gene) Caenorhabditis
Node of Origin (family) Bilateria
Genome context
(CB4)
X: 13610718-13610779 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-193-P1-v2)
Mir-193-P1-v1 X: 13610718-13610779 [+] UCSC Ensembl
Mir-193-P2-v1 X: 13610830-13610891 [+] UCSC Ensembl
Mir-193-P2-v2 X: 13610830-13610891 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGUCUUUAUUUUGAAACUGUUUUCAAAUCGAGAAUUUCGAGGCCUGAAUGCAAGAACCGUUUUGAGCAUACUGGCCUCCAAAUUUUCGCUUUGAAUUUUAGUUACGCGUGGUGAGAGUAA
Get precursor sequence
Structure
        10         20         30        40        50        60
GCUGUCUUUAUUUUGAA-    UU-|     U         C      UGA   CAAGAAC 
                  ACUG   UUCAAA CGAGAAUUU GAGGCC   AUG       C
                  UGAU   AAGUUU GCUUUUAAA CUCCGG   UAC       G
AAUGAGAGUGGUGCGCAU    UUU^     C         C      UCA   GAGUUUU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
20 Cb Ea Yo
Star sequence

Cbr-Mir-193-P1-v2_5p*

MirBase accessionNone
Sequence
0- CGAGAAUUUCGAGGCCUGAAUG -22
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Mature sequence

Cbr-Mir-193-P1-v2_3p

MirBase accessionMIMAT0001306
Sequence
40- UACUGGCCUCCAAAUUUUCGCU -62
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Seed sequenceACUGGCC