MirGeneDB

MirGeneDB ID

Ocu-Mir-193-P1a

Family name MIR-193 (all species)
Seed ACUGGCC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-193a
Paralogues Ocu-Mir-193-P1b  Ocu-Mir-193-P2a  Ocu-Mir-193-P2b 
Orthologues Aae-Mir-193-P1  Aca-Mir-193-P1a  Ami-Mir-193-P1a  Bge-Mir-193-P1  Bta-Mir-193-P1a  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1a  Cgi-Mir-193-P1  Cpi-Mir-193-P1a  Cpo-Mir-193-P1a  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1a  Dpu-Mir-193-P1  Dre-Mir-193-P1a1  Dre-Mir-193-P1a2  Ete-Mir-193-P1a  Gga-Mir-193-P1a  Hme-Mir-193-P1  Hsa-Mir-193-P1a  Isc-Mir-193-P1  Lgi-Mir-193-P1  Mdo-Mir-193-P1a  Mml-Mir-193-P1a  Mmu-Mir-193-P1a  Oan-Mir-193-P1a  Pmi-Mir-193-P1  Rno-Mir-193-P1a  Sha-Mir-193-P1a  Tca-Mir-193-P1  Tgu-Mir-193-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(oryCun2)
chr19: 21181592-21181647 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCACUCCGAGACGGACGGGAGCUGAGGGCUGGGUCUUUGCGGGCGAGAUGAGGGUGUCGGUUCAACUGGCCUACAAAGUCCCAGUCCUCGGCUAGCCGGGACCGGCGUCUUCCCC
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Structure
        10         20         30        40        50       
CGCACUCCGAGACGGAC-  G-|             U     CG   G  A   GGGU 
                  GG  AGCUGAGGGCUGGG CUUUG  GGC AG UGA    G
                  CC  UCGGCUCCUGACCC GAAAC  CCG UC ACU    U
CCCCUUCUGCGGCCAGGG  GA^             U     AU   G  A   UGGC 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-193-P1a_5p*

MirBase accessionMIMAT0048303
Sequence
0- UGGGUCUUUGCGGGCGAGAUGA -22
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Mature sequence

Ocu-Mir-193-P1a_3p

MirBase accessionMIMAT0048304
Sequence
34- AACUGGCCUACAAAGUCCCAGU -56
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