MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-193-P1a

Family name MIR-193 (all species)
Seed ACUGGCC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-193
Paralogues Xtr-Mir-193-P2a 
Orthologues Aae-Mir-193-P1  Ami-Mir-193-P1a  Bge-Mir-193-P1  Bta-Mir-193-P1a  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1a  Cgi-Mir-193-P1  Cli-Mir-193-P1a  Cmi-Mir-193-P1a  Cpi-Mir-193-P1a  Cpo-Mir-193-P1a  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1a  Dpu-Mir-193-P1  Dre-Mir-193-P1a  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Esc-Mir-193-P1  Ete-Mir-193-P1a  Gga-Mir-193-P1a  Hme-Mir-193-P1  Hsa-Mir-193-P1a  Isc-Mir-193-P1  Lch-Mir-193-P1a  Lgi-Mir-193-P1  Loc-Mir-193-P1a  Mdo-Mir-193-P1a  Mml-Mir-193-P1a  Mmu-Mir-193-P1a  Mun-Mir-193-P1a  Npo-Mir-193-P1  Oan-Mir-193-P1a  Obi-Mir-193-P1  Ocu-Mir-193-P1a  Ovu-Mir-193-P1  Pbv-Mir-193-P1a  Pma-Mir-193-P1  Pmi-Mir-193-P1  Rno-Mir-193-P1a  Sha-Mir-193-P1a  Spt-Mir-193-P1a  Sto-Mir-193-P1a  Tca-Mir-193-P1  Tgu-Mir-193-P1a  Xbo-Mir-193-P1  Xla-Mir-193-P1a3  Xla-Mir-193-P1a4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr9: 32323003-32323061 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P1a)		 Mir-193-P2a chr9: 32274432-32274492 [-] UCSC Ensembl
Mir-193-P1a chr9: 32323003-32323061 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCAACGCGUGACUAGUGUGGUUUCGGAGUCGGGAUUUUGGGGGCGAGAUGAGCUAAUGAUUUAUCCAACUGGCCCGCAAAGUCCCGCUUCUGGAAGUCACUUUGUUCUGCAAGUAAAA
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Structure
        10         20         30        40        50         
ACCAACGCGUGACUAGU-    -|       U          G    G  A  AGCUAAU 
                  GUGG UUUCGGAG CGGGAUUUUG GGGC AG UG       \
                  CACU AAGGUCUU GCCCUGAAAC CCCG UC AC       G
AAAAUGAACGUCUUGUUU    G^       C          G    G  A  CUAUUUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Em Em Em Em He
Star sequence

Xtr-Mir-193-P1a_5p*
mirBase accessionNone
Sequence 
0- CGGGAUUUUGGGGGCGAGAUGA -22
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Mature sequence

Xtr-Mir-193-P1a_3p
mirBase accessionMIMAT0003616
Sequence 
37- AACUGGCCCGCAAAGUCCCGCU -59
Get sequence
Proposed targets TargetScanVert: xtr-miR-193