MirGeneDB

MirGeneDB ID

Sha-Mir-193-P1a

Family name MIR-193 (all species)
Seed GGGUCUU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-193-P1b  Sha-Mir-193-P2a  Sha-Mir-193-P2b 
Orthologues Aae-Mir-193-P1  Aca-Mir-193-P1a  Ami-Mir-193-P1a  Bge-Mir-193-P1  Bta-Mir-193-P1a  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1a  Cgi-Mir-193-P1  Cpi-Mir-193-P1a  Cpo-Mir-193-P1a  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1a  Dpu-Mir-193-P1  Dre-Mir-193-P1a1  Dre-Mir-193-P1a2  Ete-Mir-193-P1a  Gga-Mir-193-P1a  Hme-Mir-193-P1  Hsa-Mir-193-P1a  Isc-Mir-193-P1  Lgi-Mir-193-P1  Mdo-Mir-193-P1a  Mml-Mir-193-P1a  Mmu-Mir-193-P1a  Oan-Mir-193-P1a  Ocu-Mir-193-P1a  Pmi-Mir-193-P1  Rno-Mir-193-P1a  Tca-Mir-193-P1  Tgu-Mir-193-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(DEVIL7_traces)
GL857000.1: 4480007-4480062 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
NNNNNNNNNNNNNNNNNNGGAGUUGAGGACUGGGUCUUUGCGGGCGAGAUGAGGAUGUCAAUUCAACUGGCCUACAAAGUCCCAGUUCUCGGUUCCCAAAGACCUGCGCCCCUCUC
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Structure
        10          20        30        40        50       
NNNNNNNNNNNNNNNNNN--|   UU          U     CG   G  A   GGAU 
                    GGAG  GAGGACUGGG CUUUG  GGC AG UGA    G
                    CCUU  CUCUUGACCC GAAAC  CCG UC ACU    U
CUCUCCCCGCGUCCAGAAAC^   GG          U     AU   G  A   UAAC 
    110       100        90        80        70        60
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-193-P1a_5p

MirBase accessionNone
Sequence
0- UGGGUCUUUGCGGGCGAGAUGA -22
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Star sequence

Sha-Mir-193-P1a_3p*

MirBase accessionNone
Sequence
34- AACUGGCCUACAAAGUCCCAGU -56
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