MirGeneDB

MirGeneDB ID

Dan-Mir-193-P1-v1

Family name MIR-193 (all species)
Seed GUUGGGA
Species Fruit fly (Drosophila ananassae)
MiRBase ID
Paralogues Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4 
Orthologues Aae-Mir-193-P1  Aca-Mir-193-P1a  Ami-Mir-193-P1a  Ami-Mir-193-P1b  Bfl-Mir-193-P1e  Bfl-Mir-193-P1f  Bge-Mir-193-P1  Bta-Mir-193-P1a  Bta-Mir-193-P1b  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1a  Cfa-Mir-193-P1b  Cgi-Mir-193-P1  Cli-Mir-193-P1b  Cpi-Mir-193-P1a  Cpi-Mir-193-P1b  Cpo-Mir-193-P1a  Cpo-Mir-193-P1b  Cte-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1a  Dno-Mir-193-P1b  Dpu-Mir-193-P1  Dre-Mir-193-P1a1  Dre-Mir-193-P1a2  Dre-Mir-193-P1b  Efe-Mir-193-P1g  Efe-Mir-193-P1h  Ete-Mir-193-P1a  Ete-Mir-193-P1b  Gga-Mir-193-P1a  Gga-Mir-193-P1b  Hme-Mir-193-P1  Hsa-Mir-193-P1a  Hsa-Mir-193-P1b  Isc-Mir-193-P1  Lan-Mir-193-P1i  Lan-Mir-193-P1j  Lgi-Mir-193-P1  Mdo-Mir-193-P1a  Mdo-Mir-193-P1b  Mml-Mir-193-P1a  Mml-Mir-193-P1b  Mmu-Mir-193-P1a  Mmu-Mir-193-P1b  Oan-Mir-193-P1a  Oan-Mir-193-P1b  Ocu-Mir-193-P1a  Ocu-Mir-193-P1b  Pfl-Mir-193-P1c  Pfl-Mir-193-P1d  Pmi-Mir-193-P1  Rno-Mir-193-P1a  Rno-Mir-193-P1b  Sha-Mir-193-P1a  Sha-Mir-193-P1b  Sko-Mir-193-P1c  Sko-Mir-193-P1d  Sto-Mir-193-P1b  Tca-Mir-193-P1  Tgu-Mir-193-P1a  Tgu-Mir-193-P1b  Xtr-Mir-193-P1b 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Dana_caf1)
scaffold_13337: 17070845-17070925 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGAAUCGAAAUCUGUGUGUGCCCCCAUUAUGGUUGGGAUUUUUUAGAUCAGCAGUUAUUGCUAUAUUGCCAUAUUCAUAAAUUCUCUACUGGCCUACUAAGUCCCAACAUAAUGAGAGUAAAAACCACUAUUGAAAAUAAA
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Structure
        10           20        30        40        50        60          
CGAAUCGAAAUCUGUGUG---|  CCC       G         UU   AU   CAGUUAUUGCUAUAUUGC 
                     UGC   CAUUAUG UUGGGAUUU  UAG  CAG                  \
                     AUG   GUAAUAC AACCCUGAA  AUC  GUC                  C
AAAUAAAAGUUAUCACCAAAA^  AGA       -         UC   CG   AUCUCUUAAAUACUUAUA 
 .       130       120       110        100        90        80
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Da
Mature sequence

Dan-Mir-193-P1-v1_5p

MirBase accessionNone
Sequence
0- GGUUGGGAUUUUUUAGAUCAGC -22
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Star sequence

Dan-Mir-193-P1-v1_3p*

MirBase accessionNone
Sequence
60- GGCCUACUAAGUCCCAACAUA -81
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