MirGeneDB

MirGeneDB ID

Mdo-Mir-193-P1b

Family name MIR-193 (all species)
Seed ACUGGCC
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-193b
Paralogues Mdo-Mir-193-P1a  Mdo-Mir-193-P2b 
Orthologues Aae-Mir-193-P1  Ami-Mir-193-P1b  Bge-Mir-193-P1  Bta-Mir-193-P1b  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1b  Cgi-Mir-193-P1  Cli-Mir-193-P1b  Cpi-Mir-193-P1b  Cpo-Mir-193-P1b  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1b  Dpu-Mir-193-P1  Dre-Mir-193-P1b  Ete-Mir-193-P1b  Gga-Mir-193-P1b  Hme-Mir-193-P1  Hsa-Mir-193-P1b  Isc-Mir-193-P1  Lgi-Mir-193-P1  Mml-Mir-193-P1b  Mmu-Mir-193-P1b  Oan-Mir-193-P1b  Ocu-Mir-193-P1b  Pmi-Mir-193-P1  Rno-Mir-193-P1b  Sha-Mir-193-P1b  Sto-Mir-193-P1b  Tca-Mir-193-P1  Tgu-Mir-193-P1b  Xtr-Mir-193-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(monDom5)
6: 108685053-108685111 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-193-P1b)
Mir-193-P1b 6: 108685053-108685111 [+] UCSC Ensembl
Mir-193-P2b 6: 108690927-108690987 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUGACCAUUGUGGUUGUGAUUCCAGAGUCGGGGUUUUGAGGGCGAGAUGAGUUUAUGUUUUAUCCAACUGGCCCACAAAGUCCCGCUUUUGGUGGUCACUUUAAUCAGCAAGGGAAC
Get precursor sequence
Structure
        10         20         30        40        50         
CUCUGACCAUUGUGGUU-      -|     U    GU    A    G  A  AGUUUAU 
                  GUGAUU CCAGAG CGGG  UUUG GGGC AG UG       \
                  CACUGG GGUUUU GCCC  AAAC CCCG UC AC       G
CAAGGGAACGACUAAUUU      U^     C    UG    A    G  A  CUAUUUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-193-P1b_5p*

MirBase accessionMIMAT0028652
Sequence
0- CGGGGUUUUGAGGGCGAGAUGA -22
Get sequence
Validated targets TargetScanVert: mdo-miR-193b-5p
Mature sequence

Mdo-Mir-193-P1b_3p

MirBase accessionMIMAT0028653
Sequence
37- AACUGGCCCACAAAGUCCCGCU -59
Get sequence
Validated targets TargetScanVert: mdo-miR-193b-3p