MirGeneDB ID | Pfl-Mir-193-P1c |
Family name |
MIR-193 (all species) |
Seed |
ACUGGCC |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
Pfl-Mir-193-P1d
Pfl-Mir-193-P2
|
Orthologues |
Aae-Mir-193-P1
Bge-Mir-193-P1
Cbr-Mir-193-P1-v1
Cbr-Mir-193-P1-v2
Cel-Mir-193-P1-v1
Cel-Mir-193-P1-v2
Cgi-Mir-193-P1
Cte-Mir-193-P1
Dan-Mir-193-P1-v1
Dan-Mir-193-P1-v2
Dan-Mir-193-P1-v3
Dan-Mir-193-P1-v4
Dma-Mir-193-P1
Dme-Mir-193-P1-v1
Dme-Mir-193-P1-v2
Dme-Mir-193-P1-v3
Dme-Mir-193-P1-v4
Dmo-Mir-193-P1-v1
Dmo-Mir-193-P1-v2
Dmo-Mir-193-P1-v3
Dmo-Mir-193-P1-v4
Dpu-Mir-193-P1
Dsi-Mir-193-P1-v1
Dsi-Mir-193-P1-v2
Dsi-Mir-193-P1-v3
Dsi-Mir-193-P1-v4
Dya-Mir-193-P1-v1
Dya-Mir-193-P1-v2
Dya-Mir-193-P1-v3
Dya-Mir-193-P1-v4
Esc-Mir-193-P1
Hme-Mir-193-P1
Isc-Mir-193-P1
Lgi-Mir-193-P1
Npo-Mir-193-P1
Obi-Mir-193-P1
Ovu-Mir-193-P1
Pma-Mir-193-P1
Pmi-Mir-193-P1
Sko-Mir-193-P1c
Tca-Mir-193-P1
Xbo-Mir-193-P1
|
Node of Origin (locus) |
Enteropneusta
|
Node of Origin (family) |
Bilateria
|
Genome context (Pfl) |
LD349275.1: 115030-115089 [+]
|
Precursor (pre-Mir +30nt flank) |
AUGGUCCGUCACGGGAUGUCAGUGUCGGCGCGGGGUUUUAUAGUUCAGUUUAGUGACAUCGAUAUUAAAACUGGCCUGUAAAGUCCCGCUCUGAUUUUGACCGAGUCGACAGCAUAGACG
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGGUCCGUCACGGGAU--| U C GU UU AGUGACA
GUCAG GUCGG GCGGG UUUAUAG CAGUUU U
CAGUU UAGUC CGCCC AAAUGUC GUCAAA C
GCAGAUACGACAGCUGAGC^ U U UG CG AUUAUAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Pfl-Mir-193-P1c_5p* |
mirBase accession | None |
Sequence |
0- CGGGGUUUUAUAGUUCAGUUUA -22
Get sequence
|
Mature sequence |
Pfl-Mir-193-P1c_3p |
mirBase accession | None |
Sequence |
38- AACUGGCCUGUAAAGUCCCGCU -60
Get sequence
|