MirGeneDB

MirGeneDB ID

Pfl-Mir-193-P1c

Family name MIR-193 (all species)
Seed ACUGGCC
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-193-P1d  Pfl-Mir-193-P2 
Orthologues Aae-Mir-193-P1  Bge-Mir-193-P1  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cgi-Mir-193-P1  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dpu-Mir-193-P1  Hme-Mir-193-P1  Isc-Mir-193-P1  Lgi-Mir-193-P1  Pmi-Mir-193-P1  Sko-Mir-193-P1c  Tca-Mir-193-P1 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Bilateria
Genome context
(Pfl)
LD349275.1: 115030-115089 [+]
Precursor
(pre-Mir +30nt flank)
AUGGUCCGUCACGGGAUGUCAGUGUCGGCGCGGGGUUUUAUAGUUCAGUUUAGUGACAUCGAUAUUAAAACUGGCCUGUAAAGUCCCGCUCUGAUUUUGACCGAGUCGACAGCAUAGACG
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Structure
        10          20        30        40        50         
AUGGUCCGUCACGGGAU--|    U     C     GU       UU      AGUGACA 
                   GUCAG GUCGG GCGGG  UUUAUAG  CAGUUU       U
                   CAGUU UAGUC CGCCC  AAAUGUC  GUCAAA       C
GCAGAUACGACAGCUGAGC^    U     U     UG       CG      AUUAUAG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Pt
Star sequence

Pfl-Mir-193-P1c_5p*

MirBase accessionNone
Sequence
0- CGGGGUUUUAUAGUUCAGUUUA -22
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Mature sequence

Pfl-Mir-193-P1c_3p

MirBase accessionNone
Sequence
38- AACUGGCCUGUAAAGUCCCGCU -60
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