MirGeneDB

Gene name

Bge-Mir-193-P1

Family name MIR-193 (all species)
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-193-P2 
Orthologues Aae-Mir-193-P1  Aca-Mir-193-P1a  Ami-Mir-193-P1a  Ami-Mir-193-P1b  Bfl-Mir-193-P1e  Bfl-Mir-193-P1f  Bta-Mir-193-P1a  Bta-Mir-193-P1b  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1a  Cfa-Mir-193-P1b  Cgi-Mir-193-P1  Cli-Mir-193-P1b  Cpi-Mir-193-P1a  Cpi-Mir-193-P1b  Cpo-Mir-193-P1a  Cpo-Mir-193-P1b  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1a  Dno-Mir-193-P1b  Dpu-Mir-193-P1  Dre-Mir-193-P1a1  Dre-Mir-193-P1a2  Dre-Mir-193-P1b  Efe-Mir-193-P1g  Efe-Mir-193-P1h  Ete-Mir-193-P1a  Ete-Mir-193-P1b  Gga-Mir-193-P1a  Gga-Mir-193-P1b  Hme-Mir-193-P1  Hsa-Mir-193-P1a  Hsa-Mir-193-P1b  Isc-Mir-193-P1  Lan-Mir-193-P1i  Lan-Mir-193-P1j  Lgi-Mir-193-P1  Mdo-Mir-193-P1a  Mdo-Mir-193-P1b  Mml-Mir-193-P1a  Mml-Mir-193-P1b  Mmu-Mir-193-P1a  Mmu-Mir-193-P1b  Oan-Mir-193-P1a  Oan-Mir-193-P1b  Ocu-Mir-193-P1a  Ocu-Mir-193-P1b  Pfl-Mir-193-P1c  Pfl-Mir-193-P1d  Pmi-Mir-193-P1  Rno-Mir-193-P1a  Rno-Mir-193-P1b  Sha-Mir-193-P1a  Sha-Mir-193-P1b  Sko-Mir-193-P1c  Sko-Mir-193-P1d  Sto-Mir-193-P1b  Tca-Mir-193-P1  Tgu-Mir-193-P1a  Tgu-Mir-193-P1b  Xtr-Mir-193-P1b 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Bger_2.0)
KZ618026.1: 46387-46457 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUUCGAGAAACAUCCAUCUCAGUGUGGCUUGGGCCUUAGCGGUUCAGUGGGUGUCGGUGUUACCGAUUAUCAAGUGUCUACUGGCCUGCUAAGUCCCAAGUUGCUCUGAGAACUGCCUUCUAGAUAUGUC
Get precursor sequence
Structure
        10          20        30        40        50        60     
UCUUCGAGAAACAUCCA--|     U UG       C        UU       UGUCGGUGUUAC 
                   UCUCAG G  GCUUGGG CUUAGCGG  CAGUGGG            \
                   AGAGUC C  UGAACCC GAAUCGUC  GUCAUCU            C
CUGUAUAGAUCUUCCGUCA^     U GU       U        CG       GUGAACUAUUAG 
 .       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Ny Ny Ny Ny Ny Ny Ny Ny Ov Co Co Em Em Em Em Em Em Em Em Em Em No No
Star sequence

Bge-Mir-193-P1_5p*

MirBase accessionNone
Sequence
0- UGGGCCUUAGCGGUUCAGUGGG -22
Get sequence
Mature sequence

Bge-Mir-193-P1_3p

MirBase accessionNone
Sequence
49- UACUGGCCUGCUAAGUCCCAAG -71
Get sequence
Seed sequenceACUGGCC