MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-193-P1b

Family name MIR-193 (all species)
Seed GGGUCUU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-193a
Paralogues Ami-Mir-193-P1a  Ami-Mir-193-P2a  Ami-Mir-193-P2b 
Orthologues Aae-Mir-193-P1  Aca-Mir-193-P1b  Bge-Mir-193-P1  Bta-Mir-193-P1b  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1b  Cgi-Mir-193-P1  Cmi-Mir-193-P1b  Cpi-Mir-193-P1b  Cpo-Mir-193-P1b  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1b  Dpu-Mir-193-P1  Dre-Mir-193-P1b1  Dre-Mir-193-P1b2  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Esc-Mir-193-P1  Ete-Mir-193-P1b  Gga-Mir-193-P1b  Gja-Mir-193-P1b  Gmo-Mir-193-P1b2  Hme-Mir-193-P1  Hsa-Mir-193-P1b  Isc-Mir-193-P1  Lch-Mir-193-P1b  Lgi-Mir-193-P1  Loc-Mir-193-P1b  Loc-Mir-193-P1b-as  Mal-Mir-193-P1b2  Mdo-Mir-193-P1b  Mml-Mir-193-P1b  Mmu-Mir-193-P1b  Mun-Mir-193-P1b  Npo-Mir-193-P1  Oan-Mir-193-P1b  Obi-Mir-193-P1  Ocu-Mir-193-P1b  Ovu-Mir-193-P1  Pbv-Mir-193-P1b  Pma-Mir-193-P1  Pmi-Mir-193-P1  Rno-Mir-193-P1b  Sha-Mir-193-P1b  Spt-Mir-193-P1b  Sto-Mir-193-P1b  Tca-Mir-193-P1  Tgu-Mir-193-P1b  Tni-Mir-193-P1b2  Xbo-Mir-193-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711527.1: 5177017-5177075 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-193-P1b)		 Mir-193-P2b NW_017711527.1: 5161044-5161105 [-] UCSC
Mir-193-P1b NW_017711527.1: 5177017-5177075 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCGGGCGGCCGCACCAUGCGAGCUGAGGGCUGGGUCUUUGCGGGCGAGGUGAGAGGUUCGUGCGUUCAACUGGCCUACAAAGUCCCAGUUCUCGGCUCCCAGCACCGGCGGCCGGGCGC
Get precursor sequence
Structure
        10          20        30        40        50         
GCGGGCGGCCGCACCAU--|C               U     CG   G  G   GAGGUU 
                   G GAGCUGAGGGCUGGG CUUUG  GGC AG UGA      \
                   C CUCGGCUCUUGACCC GAAAC  CCG UC ACU      C
CGCGGGCCGGCGGCCACGA^C               U     AU   G  A   UGCGUG 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-193-P1b_5p
mirBase accessionMIMAT0038208
Sequence 
0- UGGGUCUUUGCGGGCGAGGUGA -22
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Co-mature sequence

Ami-Mir-193-P1b_3p
mirBase accessionMIMAT0038209
Sequence 
37- AACUGGCCUACAAAGUCCCAGU -59
Get sequence